miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6413 3' -56 NC_001847.1 + 57924 0.66 0.892772
Target:  5'- --aGUCCGGGcCCGgcggcccgcgGCUCCGuCGCg -3'
miRNA:   3'- cagCAGGUCCaGGUaca-------CGAGGU-GCG- -5'
6413 3' -56 NC_001847.1 + 102225 0.66 0.887335
Target:  5'- gGUCGUCgGGcgggacggcGUCCAgGcGCUCgCGCGCg -3'
miRNA:   3'- -CAGCAGgUC---------CAGGUaCaCGAG-GUGCG- -5'
6413 3' -56 NC_001847.1 + 75226 0.66 0.887335
Target:  5'- -gCGaggCCAGGUCC-UGggagGCaaCCACGCg -3'
miRNA:   3'- caGCa--GGUCCAGGuACa---CGa-GGUGCG- -5'
6413 3' -56 NC_001847.1 + 66895 0.66 0.887335
Target:  5'- cUCGUC--GGUCCcgGUGUUUuagCGCGCg -3'
miRNA:   3'- cAGCAGguCCAGGuaCACGAG---GUGCG- -5'
6413 3' -56 NC_001847.1 + 27857 0.66 0.880333
Target:  5'- -cCGUgCGGGcCC-UGUGggCCGCGCu -3'
miRNA:   3'- caGCAgGUCCaGGuACACgaGGUGCG- -5'
6413 3' -56 NC_001847.1 + 97402 0.66 0.880333
Target:  5'- -aCGUCCGGGuucUCCAUGg---CCACGa -3'
miRNA:   3'- caGCAGGUCC---AGGUACacgaGGUGCg -5'
6413 3' -56 NC_001847.1 + 94428 0.66 0.873107
Target:  5'- -cCGUCguGGUCUgcGUGgguucGC-CCACGCa -3'
miRNA:   3'- caGCAGguCCAGG--UACa----CGaGGUGCG- -5'
6413 3' -56 NC_001847.1 + 1763 0.66 0.865663
Target:  5'- -gUGUCCAGGgcaUCgAUGagGCccgCCACGCa -3'
miRNA:   3'- caGCAGGUCC---AGgUACa-CGa--GGUGCG- -5'
6413 3' -56 NC_001847.1 + 101400 0.66 0.865663
Target:  5'- -gCGUCCAGGcgCUGguacaGCUCUGCGCg -3'
miRNA:   3'- caGCAGGUCCa-GGUaca--CGAGGUGCG- -5'
6413 3' -56 NC_001847.1 + 27957 0.67 0.853312
Target:  5'- -gCGUCCGGGcCCAgcucgcuagacuucgUG-GCgCCGCGCu -3'
miRNA:   3'- caGCAGGUCCaGGU---------------ACaCGaGGUGCG- -5'
6413 3' -56 NC_001847.1 + 63670 0.67 0.850142
Target:  5'- cGUUG-CCGGGcUCAgccgGUGCcggUCCACGCu -3'
miRNA:   3'- -CAGCaGGUCCaGGUa---CACG---AGGUGCG- -5'
6413 3' -56 NC_001847.1 + 100750 0.67 0.842077
Target:  5'- cUCGgggCCgGGGUCCAgGUcGCcCCGCGCc -3'
miRNA:   3'- cAGCa--GG-UCCAGGUaCA-CGaGGUGCG- -5'
6413 3' -56 NC_001847.1 + 132015 0.67 0.833819
Target:  5'- -cCG-CCGGGcUCCcgGUGCUCUcggcCGCg -3'
miRNA:   3'- caGCaGGUCC-AGGuaCACGAGGu---GCG- -5'
6413 3' -56 NC_001847.1 + 54071 0.67 0.833819
Target:  5'- cGUCGUCCccGUCCAgccagGCcccgcCCACGCc -3'
miRNA:   3'- -CAGCAGGucCAGGUaca--CGa----GGUGCG- -5'
6413 3' -56 NC_001847.1 + 29202 0.67 0.833819
Target:  5'- -cCG-CCGGGcUCCcgGUGCUCUcggcCGCg -3'
miRNA:   3'- caGCaGGUCC-AGGuaCACGAGGu---GCG- -5'
6413 3' -56 NC_001847.1 + 54377 0.67 0.833819
Target:  5'- gGUCGUCCcGGUCCGc--GC-CgGCGCg -3'
miRNA:   3'- -CAGCAGGuCCAGGUacaCGaGgUGCG- -5'
6413 3' -56 NC_001847.1 + 90209 0.68 0.816755
Target:  5'- --aGUCCAGGUCUcgGUaaaacagcacgcGCgcgUCGCGCa -3'
miRNA:   3'- cagCAGGUCCAGGuaCA------------CGa--GGUGCG- -5'
6413 3' -56 NC_001847.1 + 49212 0.68 0.807963
Target:  5'- -gCGaCgGGGcgUCCugauugGUGCUCCACGCa -3'
miRNA:   3'- caGCaGgUCC--AGGua----CACGAGGUGCG- -5'
6413 3' -56 NC_001847.1 + 82329 0.68 0.807963
Target:  5'- -aCGcCCgAGGUCCAgUGUGCgCgGCGCc -3'
miRNA:   3'- caGCaGG-UCCAGGU-ACACGaGgUGCG- -5'
6413 3' -56 NC_001847.1 + 93215 0.68 0.807963
Target:  5'- -gCGccUCCAGGUaucgaaCAcGUGCUCCGCGa -3'
miRNA:   3'- caGC--AGGUCCAg-----GUaCACGAGGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.