miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6413 5' -60.1 NC_001847.1 + 129062 0.66 0.744499
Target:  5'- cGCGCCUccGcGAGC---GCGCCGUuGACGc -3'
miRNA:   3'- -CGCGGA--C-CUCGugcCGCGGCAuCUGC- -5'
6413 5' -60.1 NC_001847.1 + 14542 0.66 0.744499
Target:  5'- cCGgCUGGAGUAUGaccGCGCCGcAGcGCGg -3'
miRNA:   3'- cGCgGACCUCGUGC---CGCGGCaUC-UGC- -5'
6413 5' -60.1 NC_001847.1 + 104194 0.66 0.744499
Target:  5'- aGCGCC-GGcAGCACGcGCuGCCGguacucgcgcGGCGg -3'
miRNA:   3'- -CGCGGaCC-UCGUGC-CG-CGGCau--------CUGC- -5'
6413 5' -60.1 NC_001847.1 + 36978 0.66 0.744499
Target:  5'- gGCGCCgGcGAGCGgGcccGCGCCGagcGGCGg -3'
miRNA:   3'- -CGCGGaC-CUCGUgC---CGCGGCau-CUGC- -5'
6413 5' -60.1 NC_001847.1 + 34714 0.66 0.744499
Target:  5'- cGCGCCgcgcUGGAGC---GCGUCG-AGGCGa -3'
miRNA:   3'- -CGCGG----ACCUCGugcCGCGGCaUCUGC- -5'
6413 5' -60.1 NC_001847.1 + 122038 0.66 0.744499
Target:  5'- cGCaGCCgaGGAGgACGGCGgCGUGuACu -3'
miRNA:   3'- -CG-CGGa-CCUCgUGCCGCgGCAUcUGc -5'
6413 5' -60.1 NC_001847.1 + 1381 0.66 0.744499
Target:  5'- aGCGCC-GGcAGCACGcGCuGCCGguacucgcgcGGCGg -3'
miRNA:   3'- -CGCGGaCC-UCGUGC-CG-CGGCau--------CUGC- -5'
6413 5' -60.1 NC_001847.1 + 30105 0.66 0.744499
Target:  5'- cGCGCCc--AGCgccGCGGCGCUGgcGGCc -3'
miRNA:   3'- -CGCGGaccUCG---UGCCGCGGCauCUGc -5'
6413 5' -60.1 NC_001847.1 + 13426 0.66 0.744499
Target:  5'- cGCGCC---AGCGC-GCGCCGUgaAGACc -3'
miRNA:   3'- -CGCGGaccUCGUGcCGCGGCA--UCUGc -5'
6413 5' -60.1 NC_001847.1 + 132918 0.66 0.744499
Target:  5'- cGCGCCc--AGCgccGCGGCGCUGgcGGCc -3'
miRNA:   3'- -CGCGGaccUCG---UGCCGCGGCauCUGc -5'
6413 5' -60.1 NC_001847.1 + 53710 0.66 0.74071
Target:  5'- cGCGCCgccggcggcucgcGGGGCGgauCGGCGCgcggCGUAGcGCGg -3'
miRNA:   3'- -CGCGGa------------CCUCGU---GCCGCG----GCAUC-UGC- -5'
6413 5' -60.1 NC_001847.1 + 126922 0.66 0.73881
Target:  5'- aGCGCgUGGcGcagcugcuucugcugGCACGGCGCCucgAGugGc -3'
miRNA:   3'- -CGCGgACC-U---------------CGUGCCGCGGca-UCugC- -5'
6413 5' -60.1 NC_001847.1 + 24213 0.66 0.734999
Target:  5'- -gGCCaGGAGCA-GGCGCuCGgcGAUc -3'
miRNA:   3'- cgCGGaCCUCGUgCCGCG-GCauCUGc -5'
6413 5' -60.1 NC_001847.1 + 63957 0.66 0.734999
Target:  5'- gGCGCC-GGcGC-CGGCGCUGcgcGACa -3'
miRNA:   3'- -CGCGGaCCuCGuGCCGCGGCau-CUGc -5'
6413 5' -60.1 NC_001847.1 + 67989 0.66 0.734999
Target:  5'- gGCgGCUUGGGGCGgcCGGUauuacgccGCCGUcGGACa -3'
miRNA:   3'- -CG-CGGACCUCGU--GCCG--------CGGCA-UCUGc -5'
6413 5' -60.1 NC_001847.1 + 73760 0.66 0.734999
Target:  5'- aGCGCCgGGcggcGGCGCGG-GCCGcuacgagcgcgGGGCGc -3'
miRNA:   3'- -CGCGGaCC----UCGUGCCgCGGCa----------UCUGC- -5'
6413 5' -60.1 NC_001847.1 + 2947 0.66 0.734999
Target:  5'- cCGCCUccAGCGCGGCGgCCGccucGGCGc -3'
miRNA:   3'- cGCGGAccUCGUGCCGC-GGCau--CUGC- -5'
6413 5' -60.1 NC_001847.1 + 15298 0.66 0.734999
Target:  5'- aCGCUgaccGGCACGGCGUCGgGGGCc -3'
miRNA:   3'- cGCGGacc-UCGUGCCGCGGCaUCUGc -5'
6413 5' -60.1 NC_001847.1 + 30563 0.66 0.734999
Target:  5'- cGCGggaCCUGGccuucCGCGGCGCgGUGGAg- -3'
miRNA:   3'- -CGC---GGACCuc---GUGCCGCGgCAUCUgc -5'
6413 5' -60.1 NC_001847.1 + 98102 0.66 0.734999
Target:  5'- gGCGCCcauGAGCGCGGCcacgaccagGuCCGcGGGCGu -3'
miRNA:   3'- -CGCGGac-CUCGUGCCG---------C-GGCaUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.