miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6414 3' -56 NC_001847.1 + 33121 0.66 0.889632
Target:  5'- gGGGCCccguaccugcGGCggGUGGUggagugGGUCGagGGCGCu -3'
miRNA:   3'- -UCCGG----------CUGuaCACCA------CCAGCa-UCGUG- -5'
6414 3' -56 NC_001847.1 + 116671 0.66 0.882656
Target:  5'- uGGCCuGCGUGUGGguccGG-CGcugcgGGCGCg -3'
miRNA:   3'- uCCGGcUGUACACCa---CCaGCa----UCGUG- -5'
6414 3' -56 NC_001847.1 + 95156 0.66 0.875452
Target:  5'- gGGuGCCGGCAUGgcgGGgGGcgcgaUCGggGGCGCg -3'
miRNA:   3'- -UC-CGGCUGUACa--CCaCC-----AGCa-UCGUG- -5'
6414 3' -56 NC_001847.1 + 14336 0.66 0.875452
Target:  5'- gGGGCCGGgc-GUGGUGG-CGgcGCcuGCg -3'
miRNA:   3'- -UCCGGCUguaCACCACCaGCauCG--UG- -5'
6414 3' -56 NC_001847.1 + 34825 0.66 0.868024
Target:  5'- cAGGCCGACcgGgcgcUGGaGG-CG-AGCGCg -3'
miRNA:   3'- -UCCGGCUGuaC----ACCaCCaGCaUCGUG- -5'
6414 3' -56 NC_001847.1 + 54507 0.66 0.858823
Target:  5'- gGGGCCGGgGUGgggggcGGUGGggCGgggccguccgggGGCGCa -3'
miRNA:   3'- -UCCGGCUgUACa-----CCACCa-GCa-----------UCGUG- -5'
6414 3' -56 NC_001847.1 + 72372 0.66 0.85252
Target:  5'- cGGGCCcaGACcc--GGUGGUCcUAGCGCc -3'
miRNA:   3'- -UCCGG--CUGuacaCCACCAGcAUCGUG- -5'
6414 3' -56 NC_001847.1 + 81580 0.66 0.85252
Target:  5'- gGGGCCGGCGgcuacgGGaGcGUCGUuguGCACg -3'
miRNA:   3'- -UCCGGCUGUaca---CCaC-CAGCAu--CGUG- -5'
6414 3' -56 NC_001847.1 + 134386 0.67 0.827745
Target:  5'- gAGGCgGuGCAggccaGUGGUGGgcUCGUAGC-Cg -3'
miRNA:   3'- -UCCGgC-UGUa----CACCACC--AGCAUCGuG- -5'
6414 3' -56 NC_001847.1 + 101158 0.67 0.810301
Target:  5'- gGGGCCGggGCcgGggccGG-GGUCGgGGCGCg -3'
miRNA:   3'- -UCCGGC--UGuaCa---CCaCCAGCaUCGUG- -5'
6414 3' -56 NC_001847.1 + 41899 0.68 0.792193
Target:  5'- cGGCgaGGCAga-GGUGGUCGgcucgcggAGCACg -3'
miRNA:   3'- uCCGg-CUGUacaCCACCAGCa-------UCGUG- -5'
6414 3' -56 NC_001847.1 + 18213 0.68 0.773492
Target:  5'- cGGGCUGGCGgucucucGGcGGUCGUGcGCGCg -3'
miRNA:   3'- -UCCGGCUGUaca----CCaCCAGCAU-CGUG- -5'
6414 3' -56 NC_001847.1 + 68344 0.7 0.694265
Target:  5'- -cGCuCGGCGUcGUGGUagccGGUCGUgAGCACg -3'
miRNA:   3'- ucCG-GCUGUA-CACCA----CCAGCA-UCGUG- -5'
6414 3' -56 NC_001847.1 + 7383 0.7 0.673734
Target:  5'- -cGCUGACA-GUGGaGGaCGUGGCGCg -3'
miRNA:   3'- ucCGGCUGUaCACCaCCaGCAUCGUG- -5'
6414 3' -56 NC_001847.1 + 63789 0.72 0.56014
Target:  5'- uGGCCGGCAucaccUGUGGUGGguuggGUGGCc- -3'
miRNA:   3'- uCCGGCUGU-----ACACCACCag---CAUCGug -5'
6414 3' -56 NC_001847.1 + 72372 0.74 0.433117
Target:  5'- uGGCCGAgcgcaccUcgGUGGUGGUgGUGGaCGCg -3'
miRNA:   3'- uCCGGCU-------GuaCACCACCAgCAUC-GUG- -5'
6414 3' -56 NC_001847.1 + 13823 0.75 0.416078
Target:  5'- gGGGCCGGCGUGUGacGGUgCGcgagGGCACg -3'
miRNA:   3'- -UCCGGCUGUACACcaCCA-GCa---UCGUG- -5'
6414 3' -56 NC_001847.1 + 134519 0.79 0.222152
Target:  5'- cGGCCGcggcGCAUGUGGUGGUacaCGgGGCGCg -3'
miRNA:   3'- uCCGGC----UGUACACCACCA---GCaUCGUG- -5'
6414 3' -56 NC_001847.1 + 78876 0.83 0.140335
Target:  5'- uGGcGCCgGGCGUGUGGUGGUCGUAcGCAg -3'
miRNA:   3'- -UC-CGG-CUGUACACCACCAGCAU-CGUg -5'
6414 3' -56 NC_001847.1 + 80842 1.1 0.001908
Target:  5'- gAGGCCGACAUGUGGUGGUCGUAGCACg -3'
miRNA:   3'- -UCCGGCUGUACACCACCAGCAUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.