miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6414 5' -63.1 NC_001847.1 + 132474 0.66 0.582554
Target:  5'- cGAGCcgauGCCggcCGAGCCGC----CGGGCGa -3'
miRNA:   3'- -CUCG----CGGa--GCUCGGCGagcaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 87337 0.66 0.582554
Target:  5'- -cGCGgacaaCCUgGAGCCGaUCG-CGGGCGc -3'
miRNA:   3'- cuCGC-----GGAgCUCGGCgAGCaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 51961 0.66 0.582554
Target:  5'- -cGCGCCccccgcCGuccGCCaGCcCGUCGGGCGu -3'
miRNA:   3'- cuCGCGGa-----GCu--CGG-CGaGCAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 100560 0.66 0.582554
Target:  5'- cAGCGCC-CGGGCCuugcGCagGUCGGcGUGc -3'
miRNA:   3'- cUCGCGGaGCUCGG----CGagCAGCC-CGC- -5'
6414 5' -63.1 NC_001847.1 + 79098 0.66 0.582554
Target:  5'- cGGCGCCUCccagGGGUCG-UCGUCGcGGUc -3'
miRNA:   3'- cUCGCGGAG----CUCGGCgAGCAGC-CCGc -5'
6414 5' -63.1 NC_001847.1 + 51368 0.66 0.582554
Target:  5'- gGGGCGCUUCGAggGCUGCcUCGcCGGuGUc -3'
miRNA:   3'- -CUCGCGGAGCU--CGGCG-AGCaGCC-CGc -5'
6414 5' -63.1 NC_001847.1 + 10245 0.66 0.582554
Target:  5'- -cGCGCCUgcCGGGcCCGCUUuUCGGaGCc -3'
miRNA:   3'- cuCGCGGA--GCUC-GGCGAGcAGCC-CGc -5'
6414 5' -63.1 NC_001847.1 + 99685 0.66 0.582554
Target:  5'- uAGCGCCUCucgcGCCGCggccgCGUCGcGCc -3'
miRNA:   3'- cUCGCGGAGcu--CGGCGa----GCAGCcCGc -5'
6414 5' -63.1 NC_001847.1 + 43553 0.66 0.582554
Target:  5'- cGGCGCCgCGGuuuGCgCGCuUCGccgCGGGCGa -3'
miRNA:   3'- cUCGCGGaGCU---CG-GCG-AGCa--GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 17819 0.66 0.579637
Target:  5'- aGGGCGCCaugccagugCGGcGCaCGUcggcgaaacagaggUCGUCGGGCGc -3'
miRNA:   3'- -CUCGCGGa--------GCU-CG-GCG--------------AGCAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 30030 0.66 0.572841
Target:  5'- -cGCGUCUauGGCCGCggcCGU-GGGCGa -3'
miRNA:   3'- cuCGCGGAgcUCGGCGa--GCAgCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 29311 0.66 0.572841
Target:  5'- -cGCgGCCgcggacaagCGAGCCGCgagCGcgagugcgCGGGCGg -3'
miRNA:   3'- cuCG-CGGa--------GCUCGGCGa--GCa-------GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 42373 0.66 0.572841
Target:  5'- cAGCGCCUCGGGggggaugaGCUCG-CGGaGCc -3'
miRNA:   3'- cUCGCGGAGCUCgg------CGAGCaGCC-CGc -5'
6414 5' -63.1 NC_001847.1 + 83591 0.66 0.572841
Target:  5'- aAGCGCUggCGAGCUGCgccgaCGcCuGGGCGc -3'
miRNA:   3'- cUCGCGGa-GCUCGGCGa----GCaG-CCCGC- -5'
6414 5' -63.1 NC_001847.1 + 60837 0.66 0.572841
Target:  5'- gGGGCGCCcgCGGcGCUGCgcggCGcCaGGGCGu -3'
miRNA:   3'- -CUCGCGGa-GCU-CGGCGa---GCaG-CCCGC- -5'
6414 5' -63.1 NC_001847.1 + 45425 0.66 0.572841
Target:  5'- aGAGCGaaggCUUGAGCCcagggcGCcCGUCGcGGCGc -3'
miRNA:   3'- -CUCGCg---GAGCUCGG------CGaGCAGC-CCGC- -5'
6414 5' -63.1 NC_001847.1 + 78327 0.66 0.572841
Target:  5'- -cGCGCCgCGGGCCcgGCUUGggcgcCGcGGCGg -3'
miRNA:   3'- cuCGCGGaGCUCGG--CGAGCa----GC-CCGC- -5'
6414 5' -63.1 NC_001847.1 + 127850 0.66 0.572841
Target:  5'- aGGCGCCgCGccAGCgGCUCGUacugCGGaGCGu -3'
miRNA:   3'- cUCGCGGaGC--UCGgCGAGCA----GCC-CGC- -5'
6414 5' -63.1 NC_001847.1 + 129297 0.66 0.572841
Target:  5'- cGAGgGCCa--GGCgGCUCGcuUCGGGUGg -3'
miRNA:   3'- -CUCgCGGagcUCGgCGAGC--AGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 72986 0.66 0.572841
Target:  5'- -cGCGCCcgCGcgggagcuGGCCGCagCG-CGGGCGc -3'
miRNA:   3'- cuCGCGGa-GC--------UCGGCGa-GCaGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.