miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6416 3' -55.4 NC_001847.1 + 24172 0.66 0.919183
Target:  5'- -cGCUGGAGGccagccaagcagcccCGCgaggcucgucggcCCGCCCGCCc -3'
miRNA:   3'- gaCGACCUUCa--------------GCGaau----------GGCGGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 126985 0.66 0.919183
Target:  5'- -cGCUGGAGGccagccaagcagcccCGCgaggcucgucggcCCGCCCGCCc -3'
miRNA:   3'- gaCGACCUUCa--------------GCGaau----------GGCGGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 63164 0.66 0.918034
Target:  5'- uUGC-GGAAGUUgGCUUcggccagcucgcGCCGCgCCACg -3'
miRNA:   3'- gACGaCCUUCAG-CGAA------------UGGCG-GGUGg -5'
6416 3' -55.4 NC_001847.1 + 57792 0.66 0.918034
Target:  5'- -gGCUGGuGGcCGCUuuccuggcgUACCGguacauuuCCCGCCu -3'
miRNA:   3'- gaCGACCuUCaGCGA---------AUGGC--------GGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 61641 0.66 0.918034
Target:  5'- -cGCUGGAcugcAG-CGCcgccACCGCggCCGCCa -3'
miRNA:   3'- gaCGACCU----UCaGCGaa--UGGCG--GGUGG- -5'
6416 3' -55.4 NC_001847.1 + 13127 0.66 0.918034
Target:  5'- -cGCgGGcGG-CGCcgcGCCGCCUGCCg -3'
miRNA:   3'- gaCGaCCuUCaGCGaa-UGGCGGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 6968 0.66 0.918034
Target:  5'- -cGC-GGcGG-CGCUU-CCGCCCGCg -3'
miRNA:   3'- gaCGaCCuUCaGCGAAuGGCGGGUGg -5'
6416 3' -55.4 NC_001847.1 + 110010 0.66 0.918034
Target:  5'- -gGCUuuaGGcAGcCGCggccGCCGCCCGCUc -3'
miRNA:   3'- gaCGA---CCuUCaGCGaa--UGGCGGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 80029 0.66 0.918034
Target:  5'- -cGCgggGGggGUCgGCgucaucGCCG-CCGCCg -3'
miRNA:   3'- gaCGa--CCuuCAG-CGaa----UGGCgGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 45193 0.66 0.918034
Target:  5'- -cGCUGGcAGUCGuCUcGCagcgcgaGCgCCGCCg -3'
miRNA:   3'- gaCGACCuUCAGC-GAaUGg------CG-GGUGG- -5'
6416 3' -55.4 NC_001847.1 + 50405 0.66 0.918034
Target:  5'- gUGCUGcGGuuGGUgCGCgccUGCCuGCaCCACCg -3'
miRNA:   3'- gACGAC-CU--UCA-GCGa--AUGG-CG-GGUGG- -5'
6416 3' -55.4 NC_001847.1 + 7197 0.66 0.918034
Target:  5'- -gGCUuuaGGcAGcCGCggccGCCGCCCGCUc -3'
miRNA:   3'- gaCGA---CCuUCaGCGaa--UGGCGGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 125607 0.66 0.918034
Target:  5'- -cGCUGGcgcacgcacGGaCGCUagcgcGCCGCCCGCUc -3'
miRNA:   3'- gaCGACCu--------UCaGCGAa----UGGCGGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 25905 0.66 0.915706
Target:  5'- -cGCUGGcuuuuugucuuUCGCccGCCGaCCCGCCg -3'
miRNA:   3'- gaCGACCuuc--------AGCGaaUGGC-GGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 76812 0.66 0.914528
Target:  5'- uCUGCUGGcAGUuugugcacuauaCGCggcgccauccggccUGCCGgCCGCCg -3'
miRNA:   3'- -GACGACCuUCA------------GCGa-------------AUGGCgGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 54813 0.66 0.912142
Target:  5'- -aGCUGGc-GcCGCUguuUGCCGCCacgGCCu -3'
miRNA:   3'- gaCGACCuuCaGCGA---AUGGCGGg--UGG- -5'
6416 3' -55.4 NC_001847.1 + 95369 0.66 0.912142
Target:  5'- -gGCUGGcGG-CGg--ACCGCgCCGCCg -3'
miRNA:   3'- gaCGACCuUCaGCgaaUGGCG-GGUGG- -5'
6416 3' -55.4 NC_001847.1 + 123816 0.66 0.912142
Target:  5'- -cGCUcc-GG-CGCcaGCCGCCCGCCg -3'
miRNA:   3'- gaCGAccuUCaGCGaaUGGCGGGUGG- -5'
6416 3' -55.4 NC_001847.1 + 102849 0.66 0.912142
Target:  5'- -cGCgGcGgcGUCGCgggGCCGCgCCACg -3'
miRNA:   3'- gaCGaC-CuuCAGCGaa-UGGCG-GGUGg -5'
6416 3' -55.4 NC_001847.1 + 86614 0.66 0.912142
Target:  5'- gCUGCUGGccgcgccgcguAAG-CGUgugggcggGCCGCgCCGCCc -3'
miRNA:   3'- -GACGACC-----------UUCaGCGaa------UGGCG-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.