miRNA display CGI


Results 1 - 20 of 1081 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6416 5' -58.2 NC_001847.1 + 18500 0.65 0.80913
Target:  5'- cGCGcGCgCGCCAGCAgcucuggcgAGuucgucuccaggguGC-CGGCCAGg -3'
miRNA:   3'- -CGC-CG-GCGGUCGUa--------UU--------------UGcGCCGGUC- -5'
6416 5' -58.2 NC_001847.1 + 15400 0.65 0.808252
Target:  5'- ---uCCGCCAGCugggcggcccugGAGCGCGGCaCGGc -3'
miRNA:   3'- cgccGGCGGUCGua----------UUUGCGCCG-GUC- -5'
6416 5' -58.2 NC_001847.1 + 52084 0.66 0.802955
Target:  5'- --cGCCGCCAGCAaccucguGCGCucggucauGGCCAc -3'
miRNA:   3'- cgcCGGCGGUCGUauu----UGCG--------CCGGUc -5'
6416 5' -58.2 NC_001847.1 + 47573 0.66 0.802955
Target:  5'- gGCGGCCGCgCAcGCGccGAgGaaGGCCGGc -3'
miRNA:   3'- -CGCCGGCG-GU-CGUauUUgCg-CCGGUC- -5'
6416 5' -58.2 NC_001847.1 + 49467 0.66 0.802955
Target:  5'- aCGGCgGCgAGCGccuGCGC-GCCAGc -3'
miRNA:   3'- cGCCGgCGgUCGUauuUGCGcCGGUC- -5'
6416 5' -58.2 NC_001847.1 + 13532 0.66 0.802955
Target:  5'- aGCGGCUGCCgcuaGGCAgcgcGACGCuGCaCGa -3'
miRNA:   3'- -CGCCGGCGG----UCGUau--UUGCGcCG-GUc -5'
6416 5' -58.2 NC_001847.1 + 54143 0.66 0.802955
Target:  5'- aGUGGCCG-CGGCGgagauGGCGCucuuuGGCCGc -3'
miRNA:   3'- -CGCCGGCgGUCGUau---UUGCG-----CCGGUc -5'
6416 5' -58.2 NC_001847.1 + 100186 0.66 0.802955
Target:  5'- cUGGCCgGCCGGC-UAAA-GUauaGGCCAGa -3'
miRNA:   3'- cGCCGG-CGGUCGuAUUUgCG---CCGGUC- -5'
6416 5' -58.2 NC_001847.1 + 4277 0.66 0.802955
Target:  5'- uUGGCgGCCA-CG-AGGCGCGcGCCGGc -3'
miRNA:   3'- cGCCGgCGGUcGUaUUUGCGC-CGGUC- -5'
6416 5' -58.2 NC_001847.1 + 59991 0.66 0.802955
Target:  5'- cGCGGCgGCCuAGCAcGcacagcgcGACGUGGgCAa -3'
miRNA:   3'- -CGCCGgCGG-UCGUaU--------UUGCGCCgGUc -5'
6416 5' -58.2 NC_001847.1 + 53245 0.66 0.802955
Target:  5'- -aGGCCGCagcucGCGUuuagaaacacGAccGCGCGGCCGa -3'
miRNA:   3'- cgCCGGCGgu---CGUA----------UU--UGCGCCGGUc -5'
6416 5' -58.2 NC_001847.1 + 85030 0.66 0.802955
Target:  5'- -aGGCCaGCCGGCGcucUAcgccgcccGGCGCGGCa-- -3'
miRNA:   3'- cgCCGG-CGGUCGU---AU--------UUGCGCCGguc -5'
6416 5' -58.2 NC_001847.1 + 99019 0.66 0.802955
Target:  5'- cGCGGCgCGCgCGGCuucgugGAAgGCGcCCAGc -3'
miRNA:   3'- -CGCCG-GCG-GUCGua----UUUgCGCcGGUC- -5'
6416 5' -58.2 NC_001847.1 + 30605 0.66 0.802955
Target:  5'- cGCGGCUgGCC-GCG---GCGCGGCg-- -3'
miRNA:   3'- -CGCCGG-CGGuCGUauuUGCGCCGguc -5'
6416 5' -58.2 NC_001847.1 + 119999 0.66 0.802955
Target:  5'- aGCGGCC-CCGacgcGCAguAGCaaGGCCAGc -3'
miRNA:   3'- -CGCCGGcGGU----CGUauUUGcgCCGGUC- -5'
6416 5' -58.2 NC_001847.1 + 86871 0.66 0.802955
Target:  5'- -aGGCCGCCGucgaccuagccuGCGggguGCGCgacgagGGCCAGc -3'
miRNA:   3'- cgCCGGCGGU------------CGUauu-UGCG------CCGGUC- -5'
6416 5' -58.2 NC_001847.1 + 60481 0.66 0.802955
Target:  5'- cGCGGCUcgGCCGGCuccAGGCGCaGCa-- -3'
miRNA:   3'- -CGCCGG--CGGUCGua-UUUGCGcCGguc -5'
6416 5' -58.2 NC_001847.1 + 55778 0.66 0.802955
Target:  5'- cGCuGCCGCaCAGCuucgcaucGCGCGGCa-- -3'
miRNA:   3'- -CGcCGGCG-GUCGuauu----UGCGCCGguc -5'
6416 5' -58.2 NC_001847.1 + 4377 0.66 0.802955
Target:  5'- cGCGaCCGCgAGCGcgcgcgcCGCGGcCCAGg -3'
miRNA:   3'- -CGCcGGCGgUCGUauuu---GCGCC-GGUC- -5'
6416 5' -58.2 NC_001847.1 + 98662 0.66 0.802955
Target:  5'- -gGGCCGCCAcGCGcccGCGCaGGUgCAGg -3'
miRNA:   3'- cgCCGGCGGU-CGUauuUGCG-CCG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.