miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6417 3' -54.2 NC_001847.1 + 115107 0.66 0.957019
Target:  5'- nCGCGcccAGGGCGGCGGccGCAgGgccgCCCu -3'
miRNA:   3'- -GCGCa--UCUCGUCGCUcuUGUgCa---GGG- -5'
6417 3' -54.2 NC_001847.1 + 104383 0.66 0.957019
Target:  5'- gCGCGgcGcuGCAGCGGGc-CGCGgucuacgCCCg -3'
miRNA:   3'- -GCGCauCu-CGUCGCUCuuGUGCa------GGG- -5'
6417 3' -54.2 NC_001847.1 + 71613 0.66 0.957019
Target:  5'- gGCGgcGccAGCAGCGcGGACACG-CgCg -3'
miRNA:   3'- gCGCauC--UCGUCGCuCUUGUGCaGgG- -5'
6417 3' -54.2 NC_001847.1 + 31100 0.66 0.957019
Target:  5'- gGUGUAccuggccugcGGGCGGCGcgcgcuGGAGCugGcgCCCg -3'
miRNA:   3'- gCGCAU----------CUCGUCGC------UCUUGugCa-GGG- -5'
6417 3' -54.2 NC_001847.1 + 4876 0.66 0.957019
Target:  5'- gGCGgcGGGCAGCGgcAGGGCccccGCG-CCg -3'
miRNA:   3'- gCGCauCUCGUCGC--UCUUG----UGCaGGg -5'
6417 3' -54.2 NC_001847.1 + 25358 0.66 0.957019
Target:  5'- gGCGgcGGucGCGGCGAuccgcacgaaGAACugG-CCCa -3'
miRNA:   3'- gCGCauCU--CGUCGCU----------CUUGugCaGGG- -5'
6417 3' -54.2 NC_001847.1 + 29981 0.66 0.957019
Target:  5'- aCGCGgccGGGccggcGCGGCGGGAGC-CGccgcugCCCg -3'
miRNA:   3'- -GCGCa--UCU-----CGUCGCUCUUGuGCa-----GGG- -5'
6417 3' -54.2 NC_001847.1 + 133913 0.66 0.957019
Target:  5'- gGUGUAccuggccugcGGGCGGCGcgcgcuGGAGCugGcgCCCg -3'
miRNA:   3'- gCGCAU----------CUCGUCGC------UCUUGugCa-GGG- -5'
6417 3' -54.2 NC_001847.1 + 132794 0.66 0.957019
Target:  5'- aCGCGgccGGGccggcGCGGCGGGAGC-CGccgcugCCCg -3'
miRNA:   3'- -GCGCa--UCU-----CGUCGCUCUUGuGCa-----GGG- -5'
6417 3' -54.2 NC_001847.1 + 55367 0.66 0.957019
Target:  5'- cCGCGggcgccGGAGacgguCGGCGAGGACAgCGUCg- -3'
miRNA:   3'- -GCGCa-----UCUC-----GUCGCUCUUGU-GCAGgg -5'
6417 3' -54.2 NC_001847.1 + 76295 0.66 0.957019
Target:  5'- gCGCGcGGAcGCAGCGccgcGGGCAccguCGUCCa -3'
miRNA:   3'- -GCGCaUCU-CGUCGCu---CUUGU----GCAGGg -5'
6417 3' -54.2 NC_001847.1 + 74139 0.66 0.957019
Target:  5'- gCGCGUGGcGCcggGGCGAauGAugGCGgcgCCUc -3'
miRNA:   3'- -GCGCAUCuCG---UCGCU--CUugUGCa--GGG- -5'
6417 3' -54.2 NC_001847.1 + 107689 0.66 0.957019
Target:  5'- gGCGgcGGGCAGCGgcAGGGCccccGCG-CCg -3'
miRNA:   3'- gCGCauCUCGUCGC--UCUUG----UGCaGGg -5'
6417 3' -54.2 NC_001847.1 + 32882 0.66 0.954695
Target:  5'- gGCGcuggAGGGCAcggugcgcgccgcgcGCGAGcgccugGACGcCGUCCCg -3'
miRNA:   3'- gCGCa---UCUCGU---------------CGCUC------UUGU-GCAGGG- -5'
6417 3' -54.2 NC_001847.1 + 72963 0.66 0.953099
Target:  5'- gCGCGUGGAccuCGGCGuGGgcuACACGgcggCCUa -3'
miRNA:   3'- -GCGCAUCUc--GUCGCuCU---UGUGCa---GGG- -5'
6417 3' -54.2 NC_001847.1 + 108740 0.66 0.953099
Target:  5'- gGCGgauGGGCGGCG-GAcgACGggCCCg -3'
miRNA:   3'- gCGCau-CUCGUCGCuCUugUGCa-GGG- -5'
6417 3' -54.2 NC_001847.1 + 56152 0.66 0.953099
Target:  5'- gGgGUGGcucAGCAGCcgcccGAGCACGcCCCc -3'
miRNA:   3'- gCgCAUC---UCGUCGcu---CUUGUGCaGGG- -5'
6417 3' -54.2 NC_001847.1 + 4968 0.66 0.953099
Target:  5'- gCGCGccgggGGGGCAGCuGGggUGCGgcggCCg -3'
miRNA:   3'- -GCGCa----UCUCGUCGcUCuuGUGCa---GGg -5'
6417 3' -54.2 NC_001847.1 + 24075 0.66 0.953099
Target:  5'- aGCGUucucacGGGCAcggucGUGAGAGCugGcgcgggUCCCa -3'
miRNA:   3'- gCGCAu-----CUCGU-----CGCUCUUGugC------AGGG- -5'
6417 3' -54.2 NC_001847.1 + 37255 0.66 0.953099
Target:  5'- aCGCGUuccuGGAGCAGCacggccGGGGCgGCGUCg- -3'
miRNA:   3'- -GCGCA----UCUCGUCGc-----UCUUG-UGCAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.