miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6417 5' -58.7 NC_001847.1 + 47141 0.66 0.791749
Target:  5'- gAUGACGcCGCgccCCUCGggcCCGGCCGc -3'
miRNA:   3'- -UACUGCuGCGacaGGAGC---GGCUGGCa -5'
6417 5' -58.7 NC_001847.1 + 50053 0.66 0.791749
Target:  5'- gGUGGCGGcCGCggGUCCgCGCgCGGCgCGg -3'
miRNA:   3'- -UACUGCU-GCGa-CAGGaGCG-GCUG-GCa -5'
6417 5' -58.7 NC_001847.1 + 49629 0.66 0.782683
Target:  5'- ---cCGGCGCUGUUUUuggagaCGCCGACCa- -3'
miRNA:   3'- uacuGCUGCGACAGGA------GCGGCUGGca -5'
6417 5' -58.7 NC_001847.1 + 130220 0.66 0.782683
Target:  5'- -gGGgGGCGCUGUUgcCGCCGGCgCGg -3'
miRNA:   3'- uaCUgCUGCGACAGgaGCGGCUG-GCa -5'
6417 5' -58.7 NC_001847.1 + 107003 0.66 0.782683
Target:  5'- -cGGCGuCGCUgcaGUCCucgggcccaacgUCGCCGGCCu- -3'
miRNA:   3'- uaCUGCuGCGA---CAGG------------AGCGGCUGGca -5'
6417 5' -58.7 NC_001847.1 + 91781 0.66 0.782683
Target:  5'- -cGGCGGCGCUGgccgcggacgCUUCGUCGGCg-- -3'
miRNA:   3'- uaCUGCUGCGACa---------GGAGCGGCUGgca -5'
6417 5' -58.7 NC_001847.1 + 27407 0.66 0.782683
Target:  5'- -gGGgGGCGCUGUUgcCGCCGGCgCGg -3'
miRNA:   3'- uaCUgCUGCGACAGgaGCGGCUG-GCa -5'
6417 5' -58.7 NC_001847.1 + 4190 0.66 0.782683
Target:  5'- -cGGCGuCGCUgcaGUCCucgggcccaacgUCGCCGGCCu- -3'
miRNA:   3'- uaCUGCuGCGA---CAGG------------AGCGGCUGGca -5'
6417 5' -58.7 NC_001847.1 + 39381 0.66 0.773484
Target:  5'- --cGCGACGCcgucgGggagCCggCGCCGGCCGg -3'
miRNA:   3'- uacUGCUGCGa----Ca---GGa-GCGGCUGGCa -5'
6417 5' -58.7 NC_001847.1 + 75329 0.66 0.773484
Target:  5'- cUGGCGcaaACGCUGcUCUCGaCCG-CCGUg -3'
miRNA:   3'- uACUGC---UGCGACaGGAGC-GGCuGGCA- -5'
6417 5' -58.7 NC_001847.1 + 100634 0.66 0.773484
Target:  5'- -cGcCGGCGCcGUCCgCGUCGGCCu- -3'
miRNA:   3'- uaCuGCUGCGaCAGGaGCGGCUGGca -5'
6417 5' -58.7 NC_001847.1 + 28761 0.66 0.773484
Target:  5'- cGUGcCGACGCgggccUUCUCGCCGACg-- -3'
miRNA:   3'- -UACuGCUGCGac---AGGAGCGGCUGgca -5'
6417 5' -58.7 NC_001847.1 + 120262 0.66 0.764162
Target:  5'- -gGACGGCcccguagcguucGCUGUCCaC-CCGACCGa -3'
miRNA:   3'- uaCUGCUG------------CGACAGGaGcGGCUGGCa -5'
6417 5' -58.7 NC_001847.1 + 106584 0.66 0.754725
Target:  5'- ---cCGGCGCcgUGUCCUCGUCGuCUGg -3'
miRNA:   3'- uacuGCUGCG--ACAGGAGCGGCuGGCa -5'
6417 5' -58.7 NC_001847.1 + 2540 0.66 0.754725
Target:  5'- -cGGCGGCGC--UCC-CGCCG-CCGg -3'
miRNA:   3'- uaCUGCUGCGacAGGaGCGGCuGGCa -5'
6417 5' -58.7 NC_001847.1 + 68636 0.66 0.754725
Target:  5'- -aGGCGGCGCg--CCUCcaccgcgccGCUGGCCGa -3'
miRNA:   3'- uaCUGCUGCGacaGGAG---------CGGCUGGCa -5'
6417 5' -58.7 NC_001847.1 + 73683 0.66 0.754725
Target:  5'- --cGCGGCGCUGcugcgcgaccgCCUCGCCGcgcCCGg -3'
miRNA:   3'- uacUGCUGCGACa----------GGAGCGGCu--GGCa -5'
6417 5' -58.7 NC_001847.1 + 105353 0.66 0.754725
Target:  5'- -cGGCGGCGC--UCC-CGCCG-CCGg -3'
miRNA:   3'- uaCUGCUGCGacAGGaGCGGCuGGCa -5'
6417 5' -58.7 NC_001847.1 + 75799 0.66 0.754725
Target:  5'- --cGCGGCGCgcgaCCUCGCCG-CCGc -3'
miRNA:   3'- uacUGCUGCGaca-GGAGCGGCuGGCa -5'
6417 5' -58.7 NC_001847.1 + 109923 0.66 0.745182
Target:  5'- --cGCGACGCcgaucaUGcUCUUUGCCGGCCGc -3'
miRNA:   3'- uacUGCUGCG------AC-AGGAGCGGCUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.