miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6418 5' -55.6 NC_001847.1 + 125055 0.66 0.916023
Target:  5'- cGCCGcUUGUGcuccCGCgCGCGGcgGGGCGc -3'
miRNA:   3'- aCGGC-AACAUc---GCGaGCGCCa-UCUGC- -5'
6418 5' -55.6 NC_001847.1 + 70068 0.66 0.916023
Target:  5'- cGCCGccGaAGCGCugggacugcUCGCGGaggAGGCGu -3'
miRNA:   3'- aCGGCaaCaUCGCG---------AGCGCCa--UCUGC- -5'
6418 5' -55.6 NC_001847.1 + 111414 0.66 0.916023
Target:  5'- cGCCaGggGcGGCGCUCGgcCGG-GGGCGg -3'
miRNA:   3'- aCGG-CaaCaUCGCGAGC--GCCaUCUGC- -5'
6418 5' -55.6 NC_001847.1 + 72358 0.66 0.916023
Target:  5'- aGCCGUgaccaacaUGgccgAGCGCaccucgguggUgGUGGUGGACGc -3'
miRNA:   3'- aCGGCA--------ACa---UCGCG----------AgCGCCAUCUGC- -5'
6418 5' -55.6 NC_001847.1 + 8601 0.66 0.916023
Target:  5'- cGCCaGggGcGGCGCUCGgcCGG-GGGCGg -3'
miRNA:   3'- aCGG-CaaCaUCGCGAGC--GCCaUCUGC- -5'
6418 5' -55.6 NC_001847.1 + 53741 0.66 0.916023
Target:  5'- cGCgCGgcGUAGCGCggauccgGCGGcccgAGGCGg -3'
miRNA:   3'- aCG-GCaaCAUCGCGag-----CGCCa---UCUGC- -5'
6418 5' -55.6 NC_001847.1 + 5582 0.66 0.910064
Target:  5'- aUGCCug-GUGGCcgcgcgguaGCUCcacuCGGUAGACGg -3'
miRNA:   3'- -ACGGcaaCAUCG---------CGAGc---GCCAUCUGC- -5'
6418 5' -55.6 NC_001847.1 + 36439 0.66 0.903865
Target:  5'- cGCCGUaGcGGCGCgCGCGGcgcGGCu -3'
miRNA:   3'- aCGGCAaCaUCGCGaGCGCCau-CUGc -5'
6418 5' -55.6 NC_001847.1 + 66790 0.66 0.903865
Target:  5'- cGCCGgcGUA-CGUcugggCGuCGGUAGGCGg -3'
miRNA:   3'- aCGGCaaCAUcGCGa----GC-GCCAUCUGC- -5'
6418 5' -55.6 NC_001847.1 + 104313 0.66 0.903865
Target:  5'- cGCCucGggGUAGaGC-CGCGcGUAGGCGg -3'
miRNA:   3'- aCGG--CaaCAUCgCGaGCGC-CAUCUGC- -5'
6418 5' -55.6 NC_001847.1 + 114235 0.66 0.903865
Target:  5'- -uCCG-UGUAGCGCUCGCccgcGACGc -3'
miRNA:   3'- acGGCaACAUCGCGAGCGccauCUGC- -5'
6418 5' -55.6 NC_001847.1 + 46513 0.66 0.903865
Target:  5'- uUGCCaGcgGcAGCGCUCGgGGggcGGCGg -3'
miRNA:   3'- -ACGG-CaaCaUCGCGAGCgCCau-CUGC- -5'
6418 5' -55.6 NC_001847.1 + 12924 0.66 0.903865
Target:  5'- cGCCGcgGgGGCGCgcgugucgucgUGCGGUgGGGCGg -3'
miRNA:   3'- aCGGCaaCaUCGCGa----------GCGCCA-UCUGC- -5'
6418 5' -55.6 NC_001847.1 + 1500 0.66 0.903865
Target:  5'- cGCCucGggGUAGaGC-CGCGcGUAGGCGg -3'
miRNA:   3'- aCGG--CaaCAUCgCGaGCGC-CAUCUGC- -5'
6418 5' -55.6 NC_001847.1 + 79414 0.66 0.903865
Target:  5'- aGCCGgaccaccGUGGCGCcCGaGGgcGGCGg -3'
miRNA:   3'- aCGGCaa-----CAUCGCGaGCgCCauCUGC- -5'
6418 5' -55.6 NC_001847.1 + 17654 0.66 0.903865
Target:  5'- aGCCGacGUcgacgacgucGGCgGCUCGCGGUccgccGGGCa -3'
miRNA:   3'- aCGGCaaCA----------UCG-CGAGCGCCA-----UCUGc -5'
6418 5' -55.6 NC_001847.1 + 31806 0.66 0.903865
Target:  5'- gGCCGUggcgGUGG-GCggCGCGG-GGGCa -3'
miRNA:   3'- aCGGCAa---CAUCgCGa-GCGCCaUCUGc -5'
6418 5' -55.6 NC_001847.1 + 54535 0.66 0.898083
Target:  5'- gGCCGUccgGgGGCGCagacggcgggggcggCGCGGaGGACGa -3'
miRNA:   3'- aCGGCAa--CaUCGCGa--------------GCGCCaUCUGC- -5'
6418 5' -55.6 NC_001847.1 + 72899 0.66 0.897428
Target:  5'- aGCUGcagGUGGCGCgccacgagGCGGUcGGCGg -3'
miRNA:   3'- aCGGCaa-CAUCGCGag------CGCCAuCUGC- -5'
6418 5' -55.6 NC_001847.1 + 81175 0.66 0.897428
Target:  5'- cGCCGcucggAGgGCUCGCGGc-GGCGc -3'
miRNA:   3'- aCGGCaaca-UCgCGAGCGCCauCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.