miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6419 5' -55.2 NC_001847.1 + 132795 0.66 0.870241
Target:  5'- cGCGGCcgGGCCGGCgcg--GCggGAGCc -3'
miRNA:   3'- -UGUCGaaCCGGUCGagcaaCGa-CUCG- -5'
6419 5' -55.2 NC_001847.1 + 130898 0.67 0.862537
Target:  5'- -uGGCUgcUGGCgCAGCUCG-UGCcGGcGCg -3'
miRNA:   3'- ugUCGA--ACCG-GUCGAGCaACGaCU-CG- -5'
6419 5' -55.2 NC_001847.1 + 32527 0.67 0.862537
Target:  5'- cGCGGCUgucggaGGCgaugcgcgcgCAGCccUCGgcGCUGGGCg -3'
miRNA:   3'- -UGUCGAa-----CCG----------GUCG--AGCaaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 15424 0.67 0.862537
Target:  5'- cGCGGCacGGCgAGCUgGUUuaaGCUG-GCg -3'
miRNA:   3'- -UGUCGaaCCGgUCGAgCAA---CGACuCG- -5'
6419 5' -55.2 NC_001847.1 + 85679 0.67 0.862537
Target:  5'- aGCAGCgccaGGCCGGCgaagaCGccgacCUGAGCg -3'
miRNA:   3'- -UGUCGaa--CCGGUCGa----GCaac--GACUCG- -5'
6419 5' -55.2 NC_001847.1 + 98469 0.67 0.862537
Target:  5'- -gGGCaUGGCCAGCUCGgguuccAGCa -3'
miRNA:   3'- ugUCGaACCGGUCGAGCaacgacUCG- -5'
6419 5' -55.2 NC_001847.1 + 87888 0.67 0.862537
Target:  5'- cGCGGCUUucugggcggGGCUuugcacaggGGCggggCGUgggGCUGGGCg -3'
miRNA:   3'- -UGUCGAA---------CCGG---------UCGa---GCAa--CGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 84528 0.67 0.854612
Target:  5'- aGCGGUaUGGUUGGCgggCGggGCgGGGCg -3'
miRNA:   3'- -UGUCGaACCGGUCGa--GCaaCGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 15076 0.67 0.854612
Target:  5'- cGCGGCUcGGCaggAGC-CGggGCUagGAGCa -3'
miRNA:   3'- -UGUCGAaCCGg--UCGaGCaaCGA--CUCG- -5'
6419 5' -55.2 NC_001847.1 + 59543 0.67 0.854612
Target:  5'- cGCGGCa--GCUGGCUgG-UGCUGGGCc -3'
miRNA:   3'- -UGUCGaacCGGUCGAgCaACGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 74727 0.67 0.854612
Target:  5'- gGCGGCcUGGaUUAGCUCGgcgacccgGCUGGGa -3'
miRNA:   3'- -UGUCGaACC-GGUCGAGCaa------CGACUCg -5'
6419 5' -55.2 NC_001847.1 + 16594 0.67 0.854612
Target:  5'- gGCGGCgugggGuGCCGGCgaucaGacGCUGAGCa -3'
miRNA:   3'- -UGUCGaa---C-CGGUCGag---CaaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 23295 0.67 0.854612
Target:  5'- aGCGGUaaaacuCCAGCUCGgcgccGCUGAGCc -3'
miRNA:   3'- -UGUCGaacc--GGUCGAGCaa---CGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 30399 0.67 0.853807
Target:  5'- gACGGCgcuggcgcUGGCCgccggcaAGCUCGUgGC-GGGCg -3'
miRNA:   3'- -UGUCGa-------ACCGG-------UCGAGCAaCGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 85659 0.67 0.846473
Target:  5'- -aGGUUUGGCgCGGC-CG-UGCUGGcGCg -3'
miRNA:   3'- ugUCGAACCG-GUCGaGCaACGACU-CG- -5'
6419 5' -55.2 NC_001847.1 + 1931 0.67 0.846473
Target:  5'- -aGGCUUaGCCGGCgcgCGgcGCaGAGCu -3'
miRNA:   3'- ugUCGAAcCGGUCGa--GCaaCGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 22978 0.67 0.846473
Target:  5'- -gGGCUggGGUgGGCUgGgcuggGCUGGGCu -3'
miRNA:   3'- ugUCGAa-CCGgUCGAgCaa---CGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 22919 0.67 0.846473
Target:  5'- -gGGCUggGGUgGGCUgGgcuggGCUGGGCu -3'
miRNA:   3'- ugUCGAa-CCGgUCGAgCaa---CGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 87490 0.67 0.846473
Target:  5'- ---aCUUGGCCGuGCUCGgcgGCUGcuuGCa -3'
miRNA:   3'- ugucGAACCGGU-CGAGCaa-CGACu--CG- -5'
6419 5' -55.2 NC_001847.1 + 125821 0.67 0.846473
Target:  5'- -gGGCUggGGUgGGCUgGgguggGCUGGGCu -3'
miRNA:   3'- ugUCGAa-CCGgUCGAgCaa---CGACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.