miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
642 3' -55 AC_000017.1 + 16420 0.65 0.581695
Target:  5'- uAGCaCUAAuGgCCGcGGCuGCUGCGGCGg -3'
miRNA:   3'- -UCG-GAUUuCgGGCaCUG-UGACGUCGU- -5'
642 3' -55 AC_000017.1 + 18938 0.65 0.578252
Target:  5'- aGGCgUccuGGCCCGaGAugugcauguaagacCACUGCGGCAu -3'
miRNA:   3'- -UCGgAuu-UCGGGCaCU--------------GUGACGUCGU- -5'
642 3' -55 AC_000017.1 + 13652 0.66 0.570235
Target:  5'- aGGCCaAGcAGCuuGUccgaucuaGGCGCUGCGGCc -3'
miRNA:   3'- -UCGGaUU-UCGggCA--------CUGUGACGUCGu -5'
642 3' -55 AC_000017.1 + 26254 0.67 0.480201
Target:  5'- aAGCa-AGGGCCCGcGGCugcugcugauaggGCUGCGGCGg -3'
miRNA:   3'- -UCGgaUUUCGGGCaCUG-------------UGACGUCGU- -5'
642 3' -55 AC_000017.1 + 7760 0.68 0.449641
Target:  5'- uGCUaauGGCCCGUGAC-CUGUggAGCu -3'
miRNA:   3'- uCGGauuUCGGGCACUGuGACG--UCGu -5'
642 3' -55 AC_000017.1 + 12511 0.68 0.419188
Target:  5'- gAGCCgguuGGCCUGUGGCuGCUGCcggaacGCGu -3'
miRNA:   3'- -UCGGauu-UCGGGCACUG-UGACGu-----CGU- -5'
642 3' -55 AC_000017.1 + 16177 0.69 0.399595
Target:  5'- cGGUCUGAauGGCCgCGUccacggugGACACUgGCGGCGg -3'
miRNA:   3'- -UCGGAUU--UCGG-GCA--------CUGUGA-CGUCGU- -5'
642 3' -55 AC_000017.1 + 17022 0.69 0.362213
Target:  5'- cGGCCUAAAGCgCGagucuggugacuUGGCGCccaccgUGCAGCu -3'
miRNA:   3'- -UCGGAUUUCGgGC------------ACUGUG------ACGUCGu -5'
642 3' -55 AC_000017.1 + 9735 0.69 0.362213
Target:  5'- aGGCU--GAGCaCCGUGGCGg-GCGGCAg -3'
miRNA:   3'- -UCGGauUUCG-GGCACUGUgaCGUCGU- -5'
642 3' -55 AC_000017.1 + 12072 0.74 0.179847
Target:  5'- cAGCCUGcaaaGGGCCCuggcUGGCACggGCAGCGg -3'
miRNA:   3'- -UCGGAU----UUCGGGc---ACUGUGa-CGUCGU- -5'
642 3' -55 AC_000017.1 + 16960 1 0.002189
Target:  5'- uAGCCU-AAGCCCGUGACACUGCAGCAg -3'
miRNA:   3'- -UCGGAuUUCGGGCACUGUGACGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.