miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
642 5' -51.1 AC_000017.1 + 23299 0.66 0.841481
Target:  5'- gCGCGUUguggcUGCACCGcugcgcugagaUCGAAGgcGAGCu -3'
miRNA:   3'- -GCGCGA-----ACGUGGCa----------GGCUUCuuUUCG- -5'
642 5' -51.1 AC_000017.1 + 19245 0.66 0.832108
Target:  5'- aGCGUUguagGCAgUG-CCGGAGuAGGGCu -3'
miRNA:   3'- gCGCGAa---CGUgGCaGGCUUCuUUUCG- -5'
642 5' -51.1 AC_000017.1 + 7251 0.67 0.781936
Target:  5'- aGCGCguaugccUGCGCgGccuUCCGGAGcGAGGUg -3'
miRNA:   3'- gCGCGa------ACGUGgC---AGGCUUCuUUUCG- -5'
642 5' -51.1 AC_000017.1 + 8230 0.68 0.737478
Target:  5'- gGCuGCUUGUccuugACCGUCUGGcugcucgAGggGAGUu -3'
miRNA:   3'- gCG-CGAACG-----UGGCAGGCU-------UCuuUUCG- -5'
642 5' -51.1 AC_000017.1 + 5570 0.68 0.71614
Target:  5'- gGCGCgagaaaUACCGauUCCGggGAGuAGGCa -3'
miRNA:   3'- gCGCGaac---GUGGC--AGGCuuCUU-UUCG- -5'
642 5' -51.1 AC_000017.1 + 13091 0.69 0.681801
Target:  5'- -aCGCUgcCACUGUCCGu-GAAGGGCg -3'
miRNA:   3'- gcGCGAacGUGGCAGGCuuCUUUUCG- -5'
642 5' -51.1 AC_000017.1 + 9556 0.69 0.674864
Target:  5'- cCGCGCcgucaccgagaccaUGCGCCGUCgccgCGggGAGaugaucGAGCg -3'
miRNA:   3'- -GCGCGa-------------ACGUGGCAG----GCuuCUU------UUCG- -5'
642 5' -51.1 AC_000017.1 + 16258 0.69 0.67023
Target:  5'- cCGCGCacgucGCACCGgCCGAcGGGcGGCc -3'
miRNA:   3'- -GCGCGaa---CGUGGCaGGCUuCUUuUCG- -5'
642 5' -51.1 AC_000017.1 + 17454 0.7 0.622507
Target:  5'- gCGCGCUggcgGCGCCGUacuuccUCGAAcggcgcggacgccGggGGGCu -3'
miRNA:   3'- -GCGCGAa---CGUGGCA------GGCUU-------------CuuUUCG- -5'
642 5' -51.1 AC_000017.1 + 25050 0.72 0.455329
Target:  5'- aCGCGCgaGC-CUG-CCGAcuuGGAGGAGCg -3'
miRNA:   3'- -GCGCGaaCGuGGCaGGCU---UCUUUUCG- -5'
642 5' -51.1 AC_000017.1 + 33437 0.75 0.348687
Target:  5'- uGCGC-UGCugUGcCCGGAGGAcaAGGCg -3'
miRNA:   3'- gCGCGaACGugGCaGGCUUCUU--UUCG- -5'
642 5' -51.1 AC_000017.1 + 17378 0.82 0.12805
Target:  5'- gGCGUccGCGCCGUUCGAGGAAGuacGGCg -3'
miRNA:   3'- gCGCGaaCGUGGCAGGCUUCUUU---UCG- -5'
642 5' -51.1 AC_000017.1 + 16994 1.14 0.000758
Target:  5'- cCGCGCUUGCACCGUCCGAAGAAAAGCg -3'
miRNA:   3'- -GCGCGAACGUGGCAGGCUUCUUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.