miRNA display CGI

Results 1 - 20 of 1026 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6420	3'	-59.1	NC_001847.1	+	54387	0.92	0.019801
	Target:  5'- cGGCGGGCGGCcgcgGgcgaGGCGGGCGCCGCCg -3' miRNA:   3'- -CCGCCCGCCGa---Ca---UCGUUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	19320	0.8	0.130267
	Target:  5'- cGCGGccGUGGCUGUuaacGCAAGCGCCGCg -3' miRNA:   3'- cCGCC--CGCCGACAu---CGUUUGCGGCGg -5'
6420	3'	-59.1	NC_001847.1	+	132379	0.8	0.130267
	Target:  5'- cGGCGGG-GGCgccGgcGCcGGCGCCGCCg -3' miRNA:   3'- -CCGCCCgCCGa--CauCGuUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	100965	0.65	0.78704
	Target:  5'- aGCGGGgcuCGGCgccgAGCuccgagcgacggaAggUGCCGCCg -3' miRNA:   3'- cCGCCC---GCCGaca-UCG-------------UuuGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	29939	0.85	0.062809
	Target:  5'- cGGUGGGCGGUUGUgucuucuuAGCGAgcauguaccugcACGCCGCCu -3' miRNA:   3'- -CCGCCCGCCGACA--------UCGUU------------UGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	95362	0.85	0.067996
	Target:  5'- uGGCGGG-GGCUGgcGGCGGaccGCGCCGCCg -3' miRNA:   3'- -CCGCCCgCCGACa-UCGUU---UGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	21187	0.84	0.079633
	Target:  5'- cGGCGacgcgcccGGCGGC-GUAGgAGACGCCGCCg -3' miRNA:   3'- -CCGC--------CCGCCGaCAUCgUUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	134132	0.82	0.095618
	Target:  5'- cGCGGGCGGCggccugGUggAGCGcgUGCCGCCg -3' miRNA:   3'- cCGCCCGCCGa-----CA--UCGUuuGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	53615	0.82	0.108847
	Target:  5'- uGGCGGGCGGCgggGUGGCA----CCGCCc -3' miRNA:   3'- -CCGCCCGCCGa--CAUCGUuugcGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	75011	0.81	0.120647
	Target:  5'- cGGCGGGCGGggGgccagcgGGCAGaagGCGCCGUCg -3' miRNA:   3'- -CCGCCCGCCgaCa------UCGUU---UGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	96336	0.81	0.114605
	Target:  5'- cGGUGGGCGGCggGcUGGCGugcgacGCGCUGCCg -3' miRNA:   3'- -CCGCCCGCCGa-C-AUCGUu-----UGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	91050	0.82	0.10607
	Target:  5'- cGCaGGCGGCgGgcGCAGACGCCGCa -3' miRNA:   3'- cCGcCCGCCGaCauCGUUUGCGGCGg -5'
6420	3'	-59.1	NC_001847.1	+	33507	0.89	0.032199
	Target:  5'- cGCGGGCGGC---GGCGGGCGCCGCCg -3' miRNA:   3'- cCGCCCGCCGacaUCGUUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	38023	0.81	0.11759
	Target:  5'- cGCGGGU-GCUGUgGGCGcGCGCCGCCg -3' miRNA:   3'- cCGCCCGcCGACA-UCGUuUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	62491	0.86	0.055003
	Target:  5'- cGGCGGGCGGCcgcgggGUGGCGGccACaGCCGCCc -3' miRNA:   3'- -CCGCCCGCCGa-----CAUCGUU--UG-CGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	115691	0.82	0.103361
	Target:  5'- cGGCGGaGCGGCUGgcccGGCAGcgggcGCGCgGCCu -3' miRNA:   3'- -CCGCC-CGCCGACa---UCGUU-----UGCGgCGG- -5'
6420	3'	-59.1	NC_001847.1	+	7245	0.81	0.120647
	Target:  5'- uGGuCGGGUGGCUGU-GCGGGCGCgGCg -3' miRNA:   3'- -CC-GCCCGCCGACAuCGUUUGCGgCGg -5'
6420	3'	-59.1	NC_001847.1	+	75344	0.8	0.130267
	Target:  5'- gGGCGGGCGGCaGUGGUAAAaGCgCGUCu -3' miRNA:   3'- -CCGCCCGCCGaCAUCGUUUgCG-GCGG- -5'
6420	3'	-59.1	NC_001847.1	+	11328	0.85	0.059566
	Target:  5'- cGGCGGGCGGCUGgcgccggAGCGGgagcacucguacGCGCgGCCg -3' miRNA:   3'- -CCGCCCGCCGACa------UCGUU------------UGCGgCGG- -5'
6420	3'	-59.1	NC_001847.1	+	66335	0.84	0.069815
	Target:  5'- cGGCGGGUGG--GgcGCGGGCGCCGCCg -3' miRNA:   3'- -CCGCCCGCCgaCauCGUUUGCGGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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