miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6420 5' -48.9 NC_001847.1 + 43225 0.66 0.999111
Target:  5'- cCGUUGcccGGUgg-CGGUGGGgGCGCGCg -3'
miRNA:   3'- cGUAGC---UCAagaGCUACUUgUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 60296 0.66 0.999111
Target:  5'- gGCAgCGGGgcggCGGgcgGcAGCGCGCGCg -3'
miRNA:   3'- -CGUaGCUCaagaGCUa--C-UUGUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 69333 0.66 0.999111
Target:  5'- gGCcUCGGGcgCUgcuggcggcgcUGGUGcuGGCGCGCGCg -3'
miRNA:   3'- -CGuAGCUCaaGA-----------GCUAC--UUGUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 75834 0.66 0.999111
Target:  5'- uGCAUgaaCGAGUuggcaggaaggUCUCGgcGGuguUGCGCGCg -3'
miRNA:   3'- -CGUA---GCUCA-----------AGAGCuaCUu--GUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 80749 0.66 0.999111
Target:  5'- cGCGUCGuGgaCUUGGUccGCGCcgGCGCg -3'
miRNA:   3'- -CGUAGCuCaaGAGCUAcuUGUG--CGCG- -5'
6420 5' -48.9 NC_001847.1 + 14380 0.66 0.998912
Target:  5'- cGCgGUCGuAGaggCUCGccGAGCugGCGUc -3'
miRNA:   3'- -CG-UAGC-UCaa-GAGCuaCUUGugCGCG- -5'
6420 5' -48.9 NC_001847.1 + 46509 0.66 0.998912
Target:  5'- aGCGUUGccagcggcAGcgCUCGggGGgcggcggcgGCGCGCGCg -3'
miRNA:   3'- -CGUAGC--------UCaaGAGCuaCU---------UGUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 77318 0.66 0.998912
Target:  5'- ---cCGAGUggUUCGAcgcgGGGCACuGCGCg -3'
miRNA:   3'- cguaGCUCAa-GAGCUa---CUUGUG-CGCG- -5'
6420 5' -48.9 NC_001847.1 + 51258 0.66 0.998912
Target:  5'- gGCAUcuucugCGGGcagC-CGGUGGACGgGCGCa -3'
miRNA:   3'- -CGUA------GCUCaa-GaGCUACUUGUgCGCG- -5'
6420 5' -48.9 NC_001847.1 + 34211 0.66 0.998677
Target:  5'- ---cCGAGUUUgCGuuuuUGGACGCGCuGCa -3'
miRNA:   3'- cguaGCUCAAGaGCu---ACUUGUGCG-CG- -5'
6420 5' -48.9 NC_001847.1 + 96973 0.66 0.998677
Target:  5'- ---aCGuuGUUCUCGcUGAugAUGUGCg -3'
miRNA:   3'- cguaGCu-CAAGAGCuACUugUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 85653 0.66 0.998677
Target:  5'- cGCGUCaGGUUUggCGcgGccguGCugGCGCg -3'
miRNA:   3'- -CGUAGcUCAAGa-GCuaCu---UGugCGCG- -5'
6420 5' -48.9 NC_001847.1 + 68890 0.66 0.998516
Target:  5'- cGCcgCGAGcaugCUCGGcccgGAgagugcagcccuuuuGCGCGCGCc -3'
miRNA:   3'- -CGuaGCUCaa--GAGCUa---CU---------------UGUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 62718 0.66 0.9984
Target:  5'- cGCGUCa----CUC--UGAGCACGCGCa -3'
miRNA:   3'- -CGUAGcucaaGAGcuACUUGUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 34871 0.66 0.998276
Target:  5'- cCAUCGAGgccgugCUCGcguucaacccGCACGCGCc -3'
miRNA:   3'- cGUAGCUCaa----GAGCuacu------UGUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 41146 0.66 0.998276
Target:  5'- gGCGUCGucgaaccgCGAgUGAGCGCGCGg -3'
miRNA:   3'- -CGUAGCucaaga--GCU-ACUUGUGCGCg -5'
6420 5' -48.9 NC_001847.1 + 83149 0.66 0.998076
Target:  5'- gGCGUCGGGcgCguccgCGAUGcGC-CgGCGCa -3'
miRNA:   3'- -CGUAGCUCaaGa----GCUACuUGuG-CGCG- -5'
6420 5' -48.9 NC_001847.1 + 58057 0.66 0.998076
Target:  5'- cGCG-CGGGccgC-CGAUuGGCGCGCGCg -3'
miRNA:   3'- -CGUaGCUCaa-GaGCUAcUUGUGCGCG- -5'
6420 5' -48.9 NC_001847.1 + 8940 0.66 0.998076
Target:  5'- cGCGUUGAGcUCUaCGAcGAGgAUGcCGCg -3'
miRNA:   3'- -CGUAGCUCaAGA-GCUaCUUgUGC-GCG- -5'
6420 5' -48.9 NC_001847.1 + 66202 0.66 0.998076
Target:  5'- cGCAUCGGcgccgcccagcGgcggCUCGG---GCGCGCGCa -3'
miRNA:   3'- -CGUAGCU-----------Caa--GAGCUacuUGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.