miRNA display CGI


Results 1 - 20 of 653 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6421 3' -61.9 NC_001847.1 + 27447 0.66 0.679925
Target:  5'- -aGCGGcGCGGGggcccugccgcuGCCCGCCGCcccccccccuccccuGCGUuuugACg -3'
miRNA:   3'- ggCGCU-CGCCC------------UGGGCGGCG---------------UGCA----UG- -5'
6421 3' -61.9 NC_001847.1 + 27874 0.66 0.679925
Target:  5'- gCCGCGcucgagcgguuggauGGCGaGGucgccgGCCCgGCCGCGCuUGCg -3'
miRNA:   3'- -GGCGC---------------UCGC-CC------UGGG-CGGCGUGcAUG- -5'
6421 3' -61.9 NC_001847.1 + 130260 0.66 0.679925
Target:  5'- -aGCGGcGCGGGggcccugccgcuGCCCGCCGCcccccccccuccccuGCGUuuugACg -3'
miRNA:   3'- ggCGCU-CGCCC------------UGGGCGGCG---------------UGCA----UG- -5'
6421 3' -61.9 NC_001847.1 + 35206 0.66 0.676039
Target:  5'- gCGCGcGGCuGGGcGCCCuGCgCGCggACGUGCu -3'
miRNA:   3'- gGCGC-UCG-CCC-UGGG-CG-GCG--UGCAUG- -5'
6421 3' -61.9 NC_001847.1 + 44680 0.66 0.676039
Target:  5'- aCCgGCGAGcCGcGGAUggGCCGCGCGgaccGCg -3'
miRNA:   3'- -GG-CGCUC-GC-CCUGggCGGCGUGCa---UG- -5'
6421 3' -61.9 NC_001847.1 + 121181 0.66 0.676039
Target:  5'- gCGCGAcauGCGGGAgCgGCacuuGCGCGggGCg -3'
miRNA:   3'- gGCGCU---CGCCCUgGgCGg---CGUGCa-UG- -5'
6421 3' -61.9 NC_001847.1 + 101564 0.66 0.676039
Target:  5'- gCCGcCGAGCccGGGCCgCGCCagacgcccccCGCGUGCg -3'
miRNA:   3'- -GGC-GCUCGc-CCUGG-GCGGc---------GUGCAUG- -5'
6421 3' -61.9 NC_001847.1 + 126555 0.66 0.676039
Target:  5'- gCCGCcccuGGCGGGGCCUGauuUGCcUGUGCc -3'
miRNA:   3'- -GGCGc---UCGCCCUGGGCg--GCGuGCAUG- -5'
6421 3' -61.9 NC_001847.1 + 47553 0.66 0.676039
Target:  5'- aCgGCGGGCGcGGggaGCCCggcgGCCGCGCa--- -3'
miRNA:   3'- -GgCGCUCGC-CC---UGGG----CGGCGUGcaug -5'
6421 3' -61.9 NC_001847.1 + 57396 0.66 0.676039
Target:  5'- aCGUGcGGCGGGuCCCGCU-CGCGg-- -3'
miRNA:   3'- gGCGC-UCGCCCuGGGCGGcGUGCaug -5'
6421 3' -61.9 NC_001847.1 + 120506 0.66 0.676039
Target:  5'- -aGCGAGCGGcGCgcgagCGCCGCggucgaaaaccACGUGCu -3'
miRNA:   3'- ggCGCUCGCCcUGg----GCGGCG-----------UGCAUG- -5'
6421 3' -61.9 NC_001847.1 + 100855 0.66 0.676039
Target:  5'- gCCG-GAGCGccGGCCCGCCGgGgGUcgGCg -3'
miRNA:   3'- -GGCgCUCGCc-CUGGGCGGCgUgCA--UG- -5'
6421 3' -61.9 NC_001847.1 + 97224 0.66 0.676039
Target:  5'- gCGCGAGuCGGGACCaagcguguUGUCGCG-GUGu -3'
miRNA:   3'- gGCGCUC-GCCCUGG--------GCGGCGUgCAUg -5'
6421 3' -61.9 NC_001847.1 + 52042 0.66 0.676039
Target:  5'- aCGCGAGgCGGaGGCCCGCC-CGg---- -3'
miRNA:   3'- gGCGCUC-GCC-CUGGGCGGcGUgcaug -5'
6421 3' -61.9 NC_001847.1 + 23742 0.66 0.676039
Target:  5'- gCCGCcccuGGCGGGGCCUGauuUGCcUGUGCc -3'
miRNA:   3'- -GGCGc---UCGCCCUGGGCg--GCGuGCAUG- -5'
6421 3' -61.9 NC_001847.1 + 2973 0.66 0.676039
Target:  5'- gCGCGcAGCgccgccGGGGCCggcgcuggaGCCGCGCGcGCu -3'
miRNA:   3'- gGCGC-UCG------CCCUGGg--------CGGCGUGCaUG- -5'
6421 3' -61.9 NC_001847.1 + 54330 0.66 0.676039
Target:  5'- gUCGCGGcGCGcGGCCuuCGCCGC-CGUAa -3'
miRNA:   3'- -GGCGCU-CGCcCUGG--GCGGCGuGCAUg -5'
6421 3' -61.9 NC_001847.1 + 62343 0.66 0.676039
Target:  5'- aCCGUGAGCccgaagccGGGGugcagcCCCGUgcgcaGCugGUGCg -3'
miRNA:   3'- -GGCGCUCG--------CCCU------GGGCGg----CGugCAUG- -5'
6421 3' -61.9 NC_001847.1 + 53378 0.66 0.676039
Target:  5'- aCGCGGGCaGGGCUagcugccggCGCCGCAgGc-- -3'
miRNA:   3'- gGCGCUCGcCCUGG---------GCGGCGUgCaug -5'
6421 3' -61.9 NC_001847.1 + 120327 0.66 0.676039
Target:  5'- aCCGCGcGCaGGGCgccgcgcagcuCCGCCGCugcgguuuUGUACg -3'
miRNA:   3'- -GGCGCuCGcCCUG-----------GGCGGCGu-------GCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.