miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6422 3' -58.2 NC_001847.1 + 77426 1.06 0.002425
Target:  5'- aAACGAGGCGAUGCCCGACACGGUCGAg -3'
miRNA:   3'- -UUGCUCCGCUACGGGCUGUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 125239 0.79 0.191107
Target:  5'- --gGGGGCGggGCCCGAgaccaCGCGGUCGGg -3'
miRNA:   3'- uugCUCCGCuaCGGGCU-----GUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 22426 0.79 0.191107
Target:  5'- --gGGGGCGggGCCCGAgaccaCGCGGUCGGg -3'
miRNA:   3'- uugCUCCGCuaCGGGCU-----GUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 88562 0.76 0.268088
Target:  5'- cGGCGGGGCuGAcGCCCGGCGCGGacuacgCGAc -3'
miRNA:   3'- -UUGCUCCG-CUaCGGGCUGUGCCa-----GCU- -5'
6422 3' -58.2 NC_001847.1 + 54401 0.76 0.287539
Target:  5'- gGGCGAGGCGG-GCgCCGcCGCGGUUGGc -3'
miRNA:   3'- -UUGCUCCGCUaCG-GGCuGUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 33483 0.74 0.352476
Target:  5'- -uCGAGGCGAUGUCCGcggcggcgGCGCGGgCGGc -3'
miRNA:   3'- uuGCUCCGCUACGGGC--------UGUGCCaGCU- -5'
6422 3' -58.2 NC_001847.1 + 78294 0.74 0.376313
Target:  5'- uGCGAGGCGGUGCUCGggcgGCugGGcCGc -3'
miRNA:   3'- uUGCUCCGCUACGGGC----UGugCCaGCu -5'
6422 3' -58.2 NC_001847.1 + 45268 0.74 0.376313
Target:  5'- gAGCGcGGCGAaGCCCGcCGCGG-CGAg -3'
miRNA:   3'- -UUGCuCCGCUaCGGGCuGUGCCaGCU- -5'
6422 3' -58.2 NC_001847.1 + 42552 0.73 0.391963
Target:  5'- gGGCGAGGaCGcgGCCgcguccuccucggCGGCGCGGUUGAu -3'
miRNA:   3'- -UUGCUCC-GCuaCGG-------------GCUGUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 27405 0.73 0.392798
Target:  5'- cGGgGGGGCGcuguUGCcgCCGGCGCGGUCGGu -3'
miRNA:   3'- -UUgCUCCGCu---ACG--GGCUGUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 130218 0.73 0.392798
Target:  5'- cGGgGGGGCGcuguUGCcgCCGGCGCGGUCGGu -3'
miRNA:   3'- -UUgCUCCGCu---ACG--GGCUGUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 121206 0.73 0.409744
Target:  5'- cGCGGGGCGGccccccUGCCgCGGCGCGGcacCGAg -3'
miRNA:   3'- uUGCUCCGCU------ACGG-GCUGUGCCa--GCU- -5'
6422 3' -58.2 NC_001847.1 + 21119 0.72 0.435998
Target:  5'- -cCGGGcGUGAUGacCCCGAuCGCGGUCGAc -3'
miRNA:   3'- uuGCUC-CGCUAC--GGGCU-GUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 120840 0.72 0.444062
Target:  5'- cAGCGGGaGCGggGCCgCGACGCcggagagGGUCGAc -3'
miRNA:   3'- -UUGCUC-CGCuaCGG-GCUGUG-------CCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 120398 0.72 0.444963
Target:  5'- cGGCGAGcGCGAgGCCCGGCGCGcGUa-- -3'
miRNA:   3'- -UUGCUC-CGCUaCGGGCUGUGC-CAgcu -5'
6422 3' -58.2 NC_001847.1 + 114945 0.72 0.45403
Target:  5'- uGGCGGGGCGggGCgCCGcccCGCGGUCu- -3'
miRNA:   3'- -UUGCUCCGCuaCG-GGCu--GUGCCAGcu -5'
6422 3' -58.2 NC_001847.1 + 94414 0.72 0.45403
Target:  5'- cGACGGGGCcAUGCCCGuCGUGGUCu- -3'
miRNA:   3'- -UUGCUCCGcUACGGGCuGUGCCAGcu -5'
6422 3' -58.2 NC_001847.1 + 61943 0.71 0.481814
Target:  5'- cAGCGGcGGCGcgGCCCG-CGCGGgcCGAc -3'
miRNA:   3'- -UUGCU-CCGCuaCGGGCuGUGCCa-GCU- -5'
6422 3' -58.2 NC_001847.1 + 34733 0.71 0.500786
Target:  5'- -uCGAGGCGAacuccGCCuuCGACGCGGcCGAg -3'
miRNA:   3'- uuGCUCCGCUa----CGG--GCUGUGCCaGCU- -5'
6422 3' -58.2 NC_001847.1 + 19726 0.71 0.500786
Target:  5'- cGACGAGGUug-GCCgGACGCGG-CGGg -3'
miRNA:   3'- -UUGCUCCGcuaCGGgCUGUGCCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.