miRNA display CGI


Results 1 - 20 of 1127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6422 5' -64.1 NC_001847.1 + 102 0.71 0.26602
Target:  5'- cGCCCcugggucCGGCGCCCcGCGCC-CCG-GCc -3'
miRNA:   3'- -UGGGc------GCCGCGGGuCGUGGuGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 135 0.69 0.369258
Target:  5'- cGCCCGCGG-GCCUcgGGCcCCgGCCGggggGCc -3'
miRNA:   3'- -UGGGCGCCgCGGG--UCGuGG-UGGCa---CG- -5'
6422 5' -64.1 NC_001847.1 + 210 0.69 0.346572
Target:  5'- cGCCCcCGGCGCCCGGgGgC-CCGaGCc -3'
miRNA:   3'- -UGGGcGCCGCGGGUCgUgGuGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 248 0.68 0.396172
Target:  5'- cCCCGacgccCGGCGCCCaggggcccgagcccgGGgGCCGCCGaGCc -3'
miRNA:   3'- uGGGC-----GCCGCGGG---------------UCgUGGUGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 371 0.69 0.346572
Target:  5'- gGCCCGCcccGCGCgCCGcGCGCCggACCGcGCu -3'
miRNA:   3'- -UGGGCGc--CGCG-GGU-CGUGG--UGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 477 0.66 0.524681
Target:  5'- gGCgCCGUcaugGGUGCCC-GCGCCuCCGcGCc -3'
miRNA:   3'- -UG-GGCG----CCGCGGGuCGUGGuGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 606 0.71 0.260039
Target:  5'- uGCCCGaCGacGCGCCCcguGUACCACCacaUGCg -3'
miRNA:   3'- -UGGGC-GC--CGCGGGu--CGUGGUGGc--ACG- -5'
6422 5' -64.1 NC_001847.1 + 640 0.7 0.311022
Target:  5'- -gCCGCGGCcgcacgGCCCA-CACUAcacCCGUGCa -3'
miRNA:   3'- ugGGCGCCG------CGGGUcGUGGU---GGCACG- -5'
6422 5' -64.1 NC_001847.1 + 743 0.71 0.250698
Target:  5'- uCCCGCGG-GCCCcccuagggcgaggccGGCccGCCGCCGgcgGCg -3'
miRNA:   3'- uGGGCGCCgCGGG---------------UCG--UGGUGGCa--CG- -5'
6422 5' -64.1 NC_001847.1 + 874 0.68 0.409267
Target:  5'- cACgCGCGGCggcggcccGCgCCGGgGCCGCCGcgGCc -3'
miRNA:   3'- -UGgGCGCCG--------CG-GGUCgUGGUGGCa-CG- -5'
6422 5' -64.1 NC_001847.1 + 945 0.7 0.303583
Target:  5'- aGCCCGCGcccggggacgacuGCG-CCGGCACCcggGCCG-GCg -3'
miRNA:   3'- -UGGGCGC-------------CGCgGGUCGUGG---UGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 947 0.75 0.13661
Target:  5'- gGCCCGCGcGCGCCgCuccacGCugCGCCGgGCg -3'
miRNA:   3'- -UGGGCGC-CGCGG-Gu----CGugGUGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 1028 0.72 0.231769
Target:  5'- cGCCCGCGGCGCgCCgcagcAGCACgAgCGUcucccGCg -3'
miRNA:   3'- -UGGGCGCCGCG-GG-----UCGUGgUgGCA-----CG- -5'
6422 5' -64.1 NC_001847.1 + 1120 0.76 0.120676
Target:  5'- -gCCGCGGCcUCCAGCACCAgCGgcgGCg -3'
miRNA:   3'- ugGGCGCCGcGGGUCGUGGUgGCa--CG- -5'
6422 5' -64.1 NC_001847.1 + 1152 0.69 0.339234
Target:  5'- gGCgCGCGGCuCCggCAGCGCgGCCGcGCa -3'
miRNA:   3'- -UGgGCGCCGcGG--GUCGUGgUGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 1178 0.68 0.377043
Target:  5'- aGCCC-CGGCGCCUuaucuCGCUAuagcuCCGUGCg -3'
miRNA:   3'- -UGGGcGCCGCGGGuc---GUGGU-----GGCACG- -5'
6422 5' -64.1 NC_001847.1 + 1204 0.68 0.417588
Target:  5'- aGCUCGUcgGGCGCcagcuCCAGCGCgCGCCGcccGCa -3'
miRNA:   3'- -UGGGCG--CCGCG-----GGUCGUG-GUGGCa--CG- -5'
6422 5' -64.1 NC_001847.1 + 1336 0.67 0.443154
Target:  5'- aGCCCcaGCGccGCGCCCuGCGCgGCCaUGUc -3'
miRNA:   3'- -UGGG--CGC--CGCGGGuCGUGgUGGcACG- -5'
6422 5' -64.1 NC_001847.1 + 1372 0.68 0.409267
Target:  5'- cGCCCGuCGaGCGCCggCAGCACgCGCUGccgGUa -3'
miRNA:   3'- -UGGGC-GC-CGCGG--GUCGUG-GUGGCa--CG- -5'
6422 5' -64.1 NC_001847.1 + 1423 0.76 0.130016
Target:  5'- gGCaCCGCGGUGCgCgGGCccaggcgcgugGCCACCGUGUa -3'
miRNA:   3'- -UG-GGCGCCGCG-GgUCG-----------UGGUGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.