miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 3' -54.9 NC_001847.1 + 29767 0.67 0.910064
Target:  5'- aCUGUCGGcccuGGCgGCcGG-GCUCUGGCc -3'
miRNA:   3'- -GGUAGCCu---UCGaCGaCCaUGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 13292 0.67 0.906374
Target:  5'- aCGUCGGugAAGCacucGC-GGUcgucgaggcagacggGCUCCGGCa -3'
miRNA:   3'- gGUAGCC--UUCGa---CGaCCA---------------UGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 14187 0.67 0.903865
Target:  5'- gCA-CGGGAGggGCUGGcgGCggggCUGGCg -3'
miRNA:   3'- gGUaGCCUUCgaCGACCa-UGa---GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 66145 0.67 0.903865
Target:  5'- ----aGGAGGCgcacgUGCUGGacgUGCUCuCGGCc -3'
miRNA:   3'- gguagCCUUCG-----ACGACC---AUGAG-GCCG- -5'
6423 3' -54.9 NC_001847.1 + 84623 0.67 0.903865
Target:  5'- gCCuucgagCGGGgccaugccgcGGCUGCUGcGcGCUCgGGCg -3'
miRNA:   3'- -GGua----GCCU----------UCGACGAC-CaUGAGgCCG- -5'
6423 3' -54.9 NC_001847.1 + 95780 0.67 0.903865
Target:  5'- gCGUCGcGGAGCUGCUGucgACgCUGGa -3'
miRNA:   3'- gGUAGC-CUUCGACGACca-UGaGGCCg -5'
6423 3' -54.9 NC_001847.1 + 1374 0.67 0.901959
Target:  5'- cCCGUC-GAGcgccggcagcacgcGCUGCcGGUACUCgcgCGGCg -3'
miRNA:   3'- -GGUAGcCUU--------------CGACGaCCAUGAG---GCCG- -5'
6423 3' -54.9 NC_001847.1 + 104187 0.67 0.901959
Target:  5'- cCCGUC-GAGcgccggcagcacgcGCUGCcGGUACUCgcgCGGCg -3'
miRNA:   3'- -GGUAGcCUU--------------CGACGaCCAUGAG---GCCG- -5'
6423 3' -54.9 NC_001847.1 + 125290 0.67 0.897428
Target:  5'- gCCGUCGcagguGggGCaagGCUGGccgugGCUCaUGGCg -3'
miRNA:   3'- -GGUAGC-----CuuCGa--CGACCa----UGAG-GCCG- -5'
6423 3' -54.9 NC_001847.1 + 88275 0.67 0.897428
Target:  5'- aCGggGGGAGCgcuucgccUGCUGGgccgacgcgGCUCgCGGCg -3'
miRNA:   3'- gGUagCCUUCG--------ACGACCa--------UGAG-GCCG- -5'
6423 3' -54.9 NC_001847.1 + 22477 0.67 0.897428
Target:  5'- gCCGUCGcagguGggGCaagGCUGGccgugGCUCaUGGCg -3'
miRNA:   3'- -GGUAGC-----CuuCGa--CGACCa----UGAG-GCCG- -5'
6423 3' -54.9 NC_001847.1 + 84199 0.67 0.897428
Target:  5'- gCCAgCaGccGCUGCUGGUccaGCUCCGcgaGCa -3'
miRNA:   3'- -GGUaGcCuuCGACGACCA---UGAGGC---CG- -5'
6423 3' -54.9 NC_001847.1 + 49799 0.67 0.897428
Target:  5'- gCCccCGGGugcgcuGCUGCUGG-GCgcgCUGGCg -3'
miRNA:   3'- -GGuaGCCUu-----CGACGACCaUGa--GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 51594 0.67 0.896772
Target:  5'- gCCGUCGGGAGg-GCa-GUGCUCCaccccggGGCg -3'
miRNA:   3'- -GGUAGCCUUCgaCGacCAUGAGG-------CCG- -5'
6423 3' -54.9 NC_001847.1 + 45815 0.67 0.890757
Target:  5'- cCCggCGGGAGCUGCcgcccGGgccACUCgcugggCGGCa -3'
miRNA:   3'- -GGuaGCCUUCGACGa----CCa--UGAG------GCCG- -5'
6423 3' -54.9 NC_001847.1 + 91776 0.67 0.883854
Target:  5'- uCCGUCGGcGGC-GCUGGccgcggACgcuucgUCGGCg -3'
miRNA:   3'- -GGUAGCCuUCGaCGACCa-----UGa-----GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 95650 0.67 0.883854
Target:  5'- uUCAcCGGGAGCcugcgcggcggGCUGGU-CUCCauGGCa -3'
miRNA:   3'- -GGUaGCCUUCGa----------CGACCAuGAGG--CCG- -5'
6423 3' -54.9 NC_001847.1 + 37560 0.67 0.883854
Target:  5'- cCCuUCGGAagacgcGGCggcGCUGGccGCUgCGGCu -3'
miRNA:   3'- -GGuAGCCU------UCGa--CGACCa-UGAgGCCG- -5'
6423 3' -54.9 NC_001847.1 + 33791 0.67 0.876724
Target:  5'- --uUCGcGggGCUGCgcgcGGcGC-CCGGCg -3'
miRNA:   3'- gguAGC-CuuCGACGa---CCaUGaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 86512 0.67 0.876724
Target:  5'- aCCGUCGcGcGGCgGCUGGgcgcccGCgugCUGGCg -3'
miRNA:   3'- -GGUAGC-CuUCGaCGACCa-----UGa--GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.