miRNA display CGI


Results 21 - 40 of 941 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 5' -58.9 NC_001847.1 + 1189 0.66 0.804526
Target:  5'- aCCGCCGcGGC-CGgcAGCU-CGUCGGgCg -3'
miRNA:   3'- -GGCGGCuUCGcGC--UCGAcGCAGUCgG- -5'
6423 5' -58.9 NC_001847.1 + 66678 0.66 0.804526
Target:  5'- cCCGCgCGGcggggccccGGcCGCGGGC-GCGgaccucugCGGCCg -3'
miRNA:   3'- -GGCG-GCU---------UC-GCGCUCGaCGCa-------GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 22107 0.66 0.804526
Target:  5'- gCGCCGggGgcgacaGCGGGC-GCGcCcugGGCCc -3'
miRNA:   3'- gGCGGCuuCg-----CGCUCGaCGCaG---UCGG- -5'
6423 5' -58.9 NC_001847.1 + 35421 0.66 0.803655
Target:  5'- gCCuaCGAGGCGCagaugcuGAGCacggUGCGgcgcgacgCGGCCg -3'
miRNA:   3'- -GGcgGCUUCGCG-------CUCG----ACGCa-------GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 89820 0.66 0.799279
Target:  5'- aCCGCCGugGAGCGCGcGGCcaacgcgcgaaacuuUGCcGUguGCa -3'
miRNA:   3'- -GGCGGC--UUCGCGC-UCG---------------ACG-CAguCGg -5'
6423 5' -58.9 NC_001847.1 + 115901 0.66 0.799279
Target:  5'- uCCGCCGGAcGCggacgggaucgaaggGgGGGCUGCcGUCGGg- -3'
miRNA:   3'- -GGCGGCUU-CG---------------CgCUCGACG-CAGUCgg -5'
6423 5' -58.9 NC_001847.1 + 94854 0.66 0.798399
Target:  5'- gCGCCGAgggggaccuuggggGGCGCGGGCagcucgcaaauccGCGcuUCGGCg -3'
miRNA:   3'- gGCGGCU--------------UCGCGCUCGa------------CGC--AGUCGg -5'
6423 5' -58.9 NC_001847.1 + 17035 0.66 0.797518
Target:  5'- gCCGCCcucGAAGUacacgcgcagcucggGCGGGCgguaaacggccgGCGUgcCAGCCg -3'
miRNA:   3'- -GGCGG---CUUCG---------------CGCUCGa-----------CGCA--GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 132969 0.66 0.796635
Target:  5'- gCCGCCcaggcGGCGCGGgcGCUGCGagaccuggugcugcgCAGCg -3'
miRNA:   3'- -GGCGGcu---UCGCGCU--CGACGCa--------------GUCGg -5'
6423 5' -58.9 NC_001847.1 + 78422 0.66 0.795751
Target:  5'- gCUGCUGgcGCGCGcGCUGaCGgaggAGCUg -3'
miRNA:   3'- -GGCGGCuuCGCGCuCGAC-GCag--UCGG- -5'
6423 5' -58.9 NC_001847.1 + 74146 0.66 0.795751
Target:  5'- gCGCCGggGCGaaugauGGCgGCGccucUCGGCg -3'
miRNA:   3'- gGCGGCuuCGCgc----UCGaCGC----AGUCGg -5'
6423 5' -58.9 NC_001847.1 + 82636 0.66 0.795751
Target:  5'- gCCGCgCGGc-CGCGcGCUcCGUCAGCUc -3'
miRNA:   3'- -GGCG-GCUucGCGCuCGAcGCAGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 81515 0.66 0.795751
Target:  5'- uUGUCGcGGaCGCGAGuCUGCGcauccguucggCGGCCg -3'
miRNA:   3'- gGCGGCuUC-GCGCUC-GACGCa----------GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 21378 0.66 0.795751
Target:  5'- gCCGCCucGG-GCG-GCU-CGUCAGCg -3'
miRNA:   3'- -GGCGGcuUCgCGCuCGAcGCAGUCGg -5'
6423 5' -58.9 NC_001847.1 + 9520 0.66 0.795751
Target:  5'- -aGCCGAgcgggcGGCGCGcuAGCguccgUGCGUgcgccagcgcugCAGCCg -3'
miRNA:   3'- ggCGGCU------UCGCGC--UCG-----ACGCA------------GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 3580 0.66 0.795751
Target:  5'- gCCGCCGggGCugaggaagucgGCGucGUUGCGgcaaAGaCCa -3'
miRNA:   3'- -GGCGGCuuCG-----------CGCu-CGACGCag--UC-GG- -5'
6423 5' -58.9 NC_001847.1 + 134382 0.66 0.795751
Target:  5'- gCCGCCGgcG-GCGGGCcgGCcUC-GCCc -3'
miRNA:   3'- -GGCGGCuuCgCGCUCGa-CGcAGuCGG- -5'
6423 5' -58.9 NC_001847.1 + 130145 0.66 0.795751
Target:  5'- -gGgCGAGGCGCaauacAGCUGCGaggacgUCAGCg -3'
miRNA:   3'- ggCgGCUUCGCGc----UCGACGC------AGUCGg -5'
6423 5' -58.9 NC_001847.1 + 31569 0.66 0.795751
Target:  5'- gCCGCCGgcG-GCGGGCcgGCcUC-GCCc -3'
miRNA:   3'- -GGCGGCuuCgCGCUCGa-CGcAGuCGG- -5'
6423 5' -58.9 NC_001847.1 + 74921 0.66 0.795751
Target:  5'- cUCGCCGAcgacGaCGcCGGGCUGUuuuucGUCGGCg -3'
miRNA:   3'- -GGCGGCUu---C-GC-GCUCGACG-----CAGUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.