miRNA display CGI


Results 101 - 120 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 82631 0.66 0.848603
Target:  5'- cCCGGGccgcGCgGCCGCGCGCUccguCAg-- -3'
miRNA:   3'- -GGCCU----CGgUGGCGCGCGGuuu-GUauu -5'
6424 3' -56.3 NC_001847.1 + 69517 0.66 0.848603
Target:  5'- gCGGcgcAGCCaaGCCcUGCGCCGAGCAg-- -3'
miRNA:   3'- gGCC---UCGG--UGGcGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 64014 0.66 0.848603
Target:  5'- gCCGGGGUCGgCGacguaCGCGCCGAAgAg-- -3'
miRNA:   3'- -GGCCUCGGUgGC-----GCGCGGUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 23880 0.66 0.848603
Target:  5'- cCCGGcGCCGCCuccgacccgGCGCcGCCuccgacccGACAUGAu -3'
miRNA:   3'- -GGCCuCGGUGG---------CGCG-CGGu-------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 96146 0.66 0.848603
Target:  5'- gCCGGAGCCggaACCGgG-GCCGGAa---- -3'
miRNA:   3'- -GGCCUCGG---UGGCgCgCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 104040 0.66 0.856545
Target:  5'- -aGGcauGCCACCGCGCuGCCcGGCc--- -3'
miRNA:   3'- ggCCu--CGGUGGCGCG-CGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 113046 0.66 0.856545
Target:  5'- gCCGGcagcAGCCGCaGCGCGUCGGcGCAc-- -3'
miRNA:   3'- -GGCC----UCGGUGgCGCGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 91158 0.66 0.86428
Target:  5'- cUCGcuGGCCA-CGCGCGCCuuAUAUAGa -3'
miRNA:   3'- -GGCc-UCGGUgGCGCGCGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 51909 0.66 0.86428
Target:  5'- gCCGccGCCccgGCCGCgGCGUCAAACAc-- -3'
miRNA:   3'- -GGCcuCGG---UGGCG-CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 48630 0.66 0.86428
Target:  5'- gCGGgcgcccAGCCGCCGCGCGaCgGuGCAg-- -3'
miRNA:   3'- gGCC------UCGGUGGCGCGC-GgUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 12389 0.66 0.86428
Target:  5'- cUCGGGGCgCguguggucggugACCGCGCGCacCAAACGg-- -3'
miRNA:   3'- -GGCCUCG-G------------UGGCGCGCG--GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1672 0.66 0.86428
Target:  5'- gCCGG-GCCGUCGCGCgGCCAGu----- -3'
miRNA:   3'- -GGCCuCGGUGGCGCG-CGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 10185 0.66 0.86275
Target:  5'- gCCGGcuuuugcgcgccGCCGCCGC-CGCCGGGCc--- -3'
miRNA:   3'- -GGCCu-----------CGGUGGCGcGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 60050 0.66 0.859664
Target:  5'- gCCGGGgcGCCGCCGacgaucuaauggugGCGCUAGugAUGg -3'
miRNA:   3'- -GGCCU--CGGUGGCg-------------CGCGGUUugUAUu -5'
6424 3' -56.3 NC_001847.1 + 86093 0.66 0.856545
Target:  5'- cCCGcGGCCgugaGCUGCGCGCCAccACGg-- -3'
miRNA:   3'- -GGCcUCGG----UGGCGCGCGGUu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 85077 0.66 0.856545
Target:  5'- cCCGGGuCCgcGCCGCGCGCgGAcccGCGg-- -3'
miRNA:   3'- -GGCCUcGG--UGGCGCGCGgUU---UGUauu -5'
6424 3' -56.3 NC_001847.1 + 73877 0.66 0.856545
Target:  5'- gCGGcGCC-CgCGCGCGCCGcgGACGc-- -3'
miRNA:   3'- gGCCuCGGuG-GCGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 69327 0.66 0.856545
Target:  5'- gCCGuGGGCCagcaGCCGCGCaGCUagcgGAGCGUc- -3'
miRNA:   3'- -GGC-CUCGG----UGGCGCG-CGG----UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 54284 0.66 0.856545
Target:  5'- gCCGGAcgGCCucgaCGCGCGCCGc------ -3'
miRNA:   3'- -GGCCU--CGGug--GCGCGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 1503 0.66 0.856545
Target:  5'- cUCGGGGUagaGCCGCGCG-UAGGCGg-- -3'
miRNA:   3'- -GGCCUCGg--UGGCGCGCgGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.