miRNA display CGI


Results 121 - 140 of 611 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 29173 0.66 0.84046
Target:  5'- gCUGGAGgcggcCCGCCGCGCcGCCG-GCGc-- -3'
miRNA:   3'- -GGCCUC-----GGUGGCGCG-CGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 18991 0.66 0.871058
Target:  5'- cCCGcGGCCgccagcgccucggGCCGCGCGCCccAGCGc-- -3'
miRNA:   3'- -GGCcUCGG-------------UGGCGCGCGGu-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104716 0.66 0.848603
Target:  5'- cCCGGcGCCuCCGCGCccGCCAcgAGCu--- -3'
miRNA:   3'- -GGCCuCGGuGGCGCG--CGGU--UUGuauu -5'
6424 3' -56.3 NC_001847.1 + 116205 0.66 0.848603
Target:  5'- aCGGAcGCCGCgGCGgCGCUggaAGACAc-- -3'
miRNA:   3'- gGCCU-CGGUGgCGC-GCGG---UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81685 0.66 0.848603
Target:  5'- aUCGucucGCCGCCGUagaGCGCCAGGCGc-- -3'
miRNA:   3'- -GGCcu--CGGUGGCG---CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 10185 0.66 0.86275
Target:  5'- gCCGGcuuuugcgcgccGCCGCCGC-CGCCGGGCc--- -3'
miRNA:   3'- -GGCCu-----------CGGUGGCGcGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 60050 0.66 0.859664
Target:  5'- gCCGGGgcGCCGCCGacgaucuaauggugGCGCUAGugAUGg -3'
miRNA:   3'- -GGCCU--CGGUGGCg-------------CGCGGUUugUAUu -5'
6424 3' -56.3 NC_001847.1 + 86093 0.66 0.856545
Target:  5'- cCCGcGGCCgugaGCUGCGCGCCAccACGg-- -3'
miRNA:   3'- -GGCcUCGG----UGGCGCGCGGUu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 85077 0.66 0.856545
Target:  5'- cCCGGGuCCgcGCCGCGCGCgGAcccGCGg-- -3'
miRNA:   3'- -GGCCUcGG--UGGCGCGCGgUU---UGUauu -5'
6424 3' -56.3 NC_001847.1 + 73877 0.66 0.856545
Target:  5'- gCGGcGCC-CgCGCGCGCCGcgGACGc-- -3'
miRNA:   3'- gGCCuCGGuG-GCGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 69327 0.66 0.856545
Target:  5'- gCCGuGGGCCagcaGCCGCGCaGCUagcgGAGCGUc- -3'
miRNA:   3'- -GGC-CUCGG----UGGCGCG-CGG----UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 54284 0.66 0.856545
Target:  5'- gCCGGAcgGCCucgaCGCGCGCCGc------ -3'
miRNA:   3'- -GGCCU--CGGug--GCGCGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 1503 0.66 0.856545
Target:  5'- cUCGGGGUagaGCCGCGCG-UAGGCGg-- -3'
miRNA:   3'- -GGCCUCGg--UGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 113046 0.66 0.856545
Target:  5'- gCCGGcagcAGCCGCaGCGCGUCGGcGCAc-- -3'
miRNA:   3'- -GGCC----UCGGUGgCGCGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 104040 0.66 0.856545
Target:  5'- -aGGcauGCCACCGCGCuGCCcGGCc--- -3'
miRNA:   3'- ggCCu--CGGUGGCGCG-CGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 52733 0.66 0.856545
Target:  5'- -aGGAGCgcgCACCgGUGCGCCAGAa---- -3'
miRNA:   3'- ggCCUCG---GUGG-CGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 47742 0.66 0.856545
Target:  5'- gCGGGGCCccgcCCGCGCGCaaguACu--- -3'
miRNA:   3'- gGCCUCGGu---GGCGCGCGguu-UGuauu -5'
6424 3' -56.3 NC_001847.1 + 30235 0.66 0.856545
Target:  5'- gCGGcccGCCGCCGCGCggGCCccGCGg-- -3'
miRNA:   3'- gGCCu--CGGUGGCGCG--CGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 108796 0.66 0.854184
Target:  5'- cCCGGGagagcugcauguacGCCGCCuucGCGCGCCugggGACGc-- -3'
miRNA:   3'- -GGCCU--------------CGGUGG---CGCGCGGu---UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 97553 0.66 0.854184
Target:  5'- gCCGGcccccGGCCGCCGCagccgcagcggccaGCGCCGccGCGUc- -3'
miRNA:   3'- -GGCC-----UCGGUGGCG--------------CGCGGUu-UGUAuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.