miRNA display CGI


Results 161 - 180 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 9107 0.67 0.835481
Target:  5'- cUCGGAGCCACCGCaG-GCCcugguuguuuuuuACGUGg -3'
miRNA:   3'- -GGCCUCGGUGGCG-CgCGGuu-----------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 123035 0.67 0.8149
Target:  5'- uCCgGGGGCCgcuggaaguacgGCCGCggGCGCCGGACc--- -3'
miRNA:   3'- -GG-CCUCGG------------UGGCG--CGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 102053 0.67 0.806029
Target:  5'- gCGcGAGCgcugUACUGCGCGCCGcGCAg-- -3'
miRNA:   3'- gGC-CUCG----GUGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 65682 0.67 0.796997
Target:  5'- -aGGAGCCccGCCGC-CGCCGcGCGc-- -3'
miRNA:   3'- ggCCUCGG--UGGCGcGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 70804 0.67 0.796997
Target:  5'- gCGGGGCCgggaggggauccGCCGaGCGCCGAGucccCGUAAg -3'
miRNA:   3'- gGCCUCGG------------UGGCgCGCGGUUU----GUAUU- -5'
6424 3' -56.3 NC_001847.1 + 31563 0.67 0.796997
Target:  5'- gCCGGcGCCGCCG-GCGgCGGGCcgGc -3'
miRNA:   3'- -GGCCuCGGUGGCgCGCgGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 90882 0.67 0.796997
Target:  5'- gCCGGGGCCguugcccagucGCCgGCGCGCUcAGCc--- -3'
miRNA:   3'- -GGCCUCGG-----------UGG-CGCGCGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 110823 0.67 0.796997
Target:  5'- gUGGcgcGCCACCGCuCGCUggGCAUc- -3'
miRNA:   3'- gGCCu--CGGUGGCGcGCGGuuUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 113182 0.67 0.796997
Target:  5'- aCCGGcGCCGCgGCccaGCGcCCGGACGa-- -3'
miRNA:   3'- -GGCCuCGGUGgCG---CGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 122690 0.67 0.796997
Target:  5'- gCGGAGgcuCCGCCGCGCGCgCuguGCcgGc -3'
miRNA:   3'- gGCCUC---GGUGGCGCGCG-Guu-UGuaUu -5'
6424 3' -56.3 NC_001847.1 + 126055 0.67 0.796997
Target:  5'- uCCGaGAGCgGcaccCCGCGCGCguAGCAg-- -3'
miRNA:   3'- -GGC-CUCGgU----GGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134090 0.67 0.796997
Target:  5'- cCCGGcGCCGCCGCuuGCUcuggcGAGCAg-- -3'
miRNA:   3'- -GGCCuCGGUGGCGcgCGG-----UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104745 0.67 0.806029
Target:  5'- gCCGGcGGCCAgCGCcaGCGCCGucuGCGc-- -3'
miRNA:   3'- -GGCC-UCGGUgGCG--CGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 3220 0.67 0.806029
Target:  5'- gCGcAGCCGCuCGCGCGCCGcccGCGc-- -3'
miRNA:   3'- gGCcUCGGUG-GCGCGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 65169 0.67 0.806029
Target:  5'- aCCGGAugugGcCCAUCGCGCGCgAu-CAUGGg -3'
miRNA:   3'- -GGCCU----C-GGUGGCGCGCGgUuuGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 76432 0.67 0.806029
Target:  5'- cCCGGGGUgGCCGCGacgguggaUGCCAGcgcCAUGg -3'
miRNA:   3'- -GGCCUCGgUGGCGC--------GCGGUUu--GUAUu -5'
6424 3' -56.3 NC_001847.1 + 82324 0.67 0.806029
Target:  5'- gCGGGGUCGCCG-GCGaCGAGCGa-- -3'
miRNA:   3'- gGCCUCGGUGGCgCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 29284 0.67 0.8149
Target:  5'- cCCGGAGCgCGugcuCCGgGCcGCCGAGCu--- -3'
miRNA:   3'- -GGCCUCG-GU----GGCgCG-CGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 131245 0.67 0.806029
Target:  5'- uCCGc-GCCACCGCGCGC--AACGg-- -3'
miRNA:   3'- -GGCcuCGGUGGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 32114 0.67 0.806029
Target:  5'- cCCGGgcucgGGCCcCCGgGCGCCGggGGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGuGGCgCGCGGU--UUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.