miRNA display CGI


Results 81 - 100 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 72225 0.73 0.48645
Target:  5'- -aGGAGCCGcCCGCGgGCCccGAGCAc-- -3'
miRNA:   3'- ggCCUCGGU-GGCGCgCGG--UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 130105 0.73 0.496126
Target:  5'- gUCGGAGCCGCCGCcgguCGcCCGAGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCGc---GC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 48154 0.73 0.505888
Target:  5'- gCCGG-GCCGgCGCGCGCCGGc----- -3'
miRNA:   3'- -GGCCuCGGUgGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 27802 0.73 0.505888
Target:  5'- gCgGGGGCCACCGaggGCGCCGAGg---- -3'
miRNA:   3'- -GgCCUCGGUGGCg--CGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 2997 0.73 0.505888
Target:  5'- gCUGGAGCCgcgcgcgcuccACCGCgucgcgggccGCGCCGAGCAg-- -3'
miRNA:   3'- -GGCCUCGG-----------UGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 27292 0.73 0.496126
Target:  5'- gUCGGAGCCGCCGCcgguCGcCCGAGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCGc---GC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 88234 0.73 0.483565
Target:  5'- gCCGGAGCCgaggccggcgcggcGCgGgGCGCCGGGCGg-- -3'
miRNA:   3'- -GGCCUCGG--------------UGgCgCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 102952 0.73 0.467373
Target:  5'- gCGGuaaccuccGCCGCgCGCGCGCCAAGCu--- -3'
miRNA:   3'- gGCCu-------CGGUG-GCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 52298 0.73 0.457981
Target:  5'- gCCGGAcGUaCGCCGCGCGgCAAACGa-- -3'
miRNA:   3'- -GGCCU-CG-GUGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 53020 0.73 0.48645
Target:  5'- gCGGcGGCCGCUGCGCGCuCGGGCc--- -3'
miRNA:   3'- gGCC-UCGGUGGCGCGCG-GUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 59279 0.72 0.515732
Target:  5'- aUGGAcGCCGCCGCGCGC--AACAc-- -3'
miRNA:   3'- gGCCU-CGGUGGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 29365 0.72 0.535642
Target:  5'- cCCGGcGgCGCUGCGCGCCGAGgCGg-- -3'
miRNA:   3'- -GGCCuCgGUGGCGCGCGGUUU-GUauu -5'
6424 3' -56.3 NC_001847.1 + 31187 0.72 0.555816
Target:  5'- gCCGGAGCCGCgCGCcgagGCGCCGc------ -3'
miRNA:   3'- -GGCCUCGGUG-GCG----CGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 133207 0.72 0.545699
Target:  5'- -aGGAGCUcugcGCCGCGCGCCGGc----- -3'
miRNA:   3'- ggCCUCGG----UGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 55014 0.72 0.545699
Target:  5'- gCUGGAGuCCAUgCGCGCGUCGGGCGc-- -3'
miRNA:   3'- -GGCCUC-GGUG-GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 115499 0.72 0.514744
Target:  5'- gCCGGgcccgcaAGCgGCCGCGCGCCGAcgccgGCGc-- -3'
miRNA:   3'- -GGCC-------UCGgUGGCGCGCGGUU-----UGUauu -5'
6424 3' -56.3 NC_001847.1 + 82049 0.72 0.515732
Target:  5'- gCGG-GCCGCCGCccCGCCGAACGc-- -3'
miRNA:   3'- gGCCuCGGUGGCGc-GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 123490 0.72 0.545699
Target:  5'- gCUGGGGCCGCCGCaaGCgGGGCcgGGg -3'
miRNA:   3'- -GGCCUCGGUGGCGcgCGgUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 2917 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 38216 0.72 0.525651
Target:  5'- gCGGAgGCCcggGCCGCGCGCCucuACGc-- -3'
miRNA:   3'- gGCCU-CGG---UGGCGCGCGGuu-UGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.