miRNA display CGI


Results 101 - 120 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 134000 0.72 0.555816
Target:  5'- gCCGGAGCCGCgCGCcgagGCGCCGc------ -3'
miRNA:   3'- -GGCCUCGGUG-GCG----CGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 2917 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 69749 0.72 0.545699
Target:  5'- gUGGccuGCCACCGCGCGCUGuuCAg-- -3'
miRNA:   3'- gGCCu--CGGUGGCGCGCGGUuuGUauu -5'
6424 3' -56.3 NC_001847.1 + 29365 0.72 0.535642
Target:  5'- cCCGGcGgCGCUGCGCGCCGAGgCGg-- -3'
miRNA:   3'- -GGCCuCgGUGGCGCGCGGUUU-GUauu -5'
6424 3' -56.3 NC_001847.1 + 115499 0.72 0.514744
Target:  5'- gCCGGgcccgcaAGCgGCCGCGCGCCGAcgccgGCGc-- -3'
miRNA:   3'- -GGCC-------UCGgUGGCGCGCGGUU-----UGUauu -5'
6424 3' -56.3 NC_001847.1 + 64354 0.72 0.555816
Target:  5'- cCCGGccCCGCCGCGaagcgagcCGCCAGACAa-- -3'
miRNA:   3'- -GGCCucGGUGGCGC--------GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 36612 0.72 0.515732
Target:  5'- aCCGGGuguGCUACCGCGCGgUggGCGa-- -3'
miRNA:   3'- -GGCCU---CGGUGGCGCGCgGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 123490 0.72 0.545699
Target:  5'- gCUGGGGCCGCCGCaaGCgGGGCcgGGg -3'
miRNA:   3'- -GGCCUCGGUGGCGcgCGgUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 38216 0.72 0.525651
Target:  5'- gCGGAgGCCcggGCCGCGCGCCucuACGc-- -3'
miRNA:   3'- gGCCU-CGG---UGGCGCGCGGuu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 55014 0.72 0.545699
Target:  5'- gCUGGAGuCCAUgCGCGCGUCGGGCGc-- -3'
miRNA:   3'- -GGCCUC-GGUG-GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33885 0.72 0.555816
Target:  5'- -aGGcGCCGCCGCGCGUggccgCGGGCGUGc -3'
miRNA:   3'- ggCCuCGGUGGCGCGCG-----GUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 63950 0.71 0.607074
Target:  5'- gCgGGGGCagCAgCGCGUGCCAGGCGUc- -3'
miRNA:   3'- -GgCCUCG--GUgGCGCGCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 29957 0.71 0.607074
Target:  5'- gCCGGcgaaaAGCCGCCGC-CGCCGAcGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGcGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 2298 0.71 0.607074
Target:  5'- gCGGGGCCGCCGgGCGgCAugggccccAGCAc-- -3'
miRNA:   3'- gGCCUCGGUGGCgCGCgGU--------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 59226 0.71 0.607074
Target:  5'- gCGGcGCCACCGCGUGCuCGuguuACGUc- -3'
miRNA:   3'- gGCCuCGGUGGCGCGCG-GUu---UGUAuu -5'
6424 3' -56.3 NC_001847.1 + 104118 0.71 0.606041
Target:  5'- gCCGGcguuGCCGgCGCGCgcgcgccggcaacGCCGGACAUGGu -3'
miRNA:   3'- -GGCCu---CGGUgGCGCG-------------CGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 35453 0.71 0.596755
Target:  5'- aCGGcGGCCcgcGCCGCGCGCC--GCAa-- -3'
miRNA:   3'- gGCC-UCGG---UGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 74738 0.71 0.586462
Target:  5'- uUCGGcGCUugCGCGCG-CGAGCAUGc -3'
miRNA:   3'- -GGCCuCGGugGCGCGCgGUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 39139 0.71 0.616377
Target:  5'- gCGuuGAGCCGcagguuuCCGCGCGCgAAGCAUAc -3'
miRNA:   3'- gGC--CUCGGU-------GGCGCGCGgUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 67683 0.71 0.596755
Target:  5'- gCCGcGGCCGCCGCGCGCgCGcugGACc--- -3'
miRNA:   3'- -GGCcUCGGUGGCGCGCG-GU---UUGuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.