miRNA display CGI


Results 121 - 140 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 77375 0.71 0.607074
Target:  5'- cCCGGcgagcaccagcAGCCccgugGCCaGCGCGCCGAACGg-- -3'
miRNA:   3'- -GGCC-----------UCGG-----UGG-CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 63950 0.71 0.607074
Target:  5'- gCgGGGGCagCAgCGCGUGCCAGGCGUc- -3'
miRNA:   3'- -GgCCUCG--GUgGCGCGCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 29957 0.71 0.607074
Target:  5'- gCCGGcgaaaAGCCGCCGC-CGCCGAcGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGcGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 30796 0.71 0.576204
Target:  5'- gCGGAcGCCGCCGCGUcuGCCGccgcGGCAa-- -3'
miRNA:   3'- gGCCU-CGGUGGCGCG--CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131195 0.71 0.576204
Target:  5'- gCCGGAGacggcgccccccCCGCCGCGgCGCCAGcGCGg-- -3'
miRNA:   3'- -GGCCUC------------GGUGGCGC-GCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 44606 0.71 0.586462
Target:  5'- gCGaGGGCCGCCaGgGCGCCGuucAGCAUGc -3'
miRNA:   3'- gGC-CUCGGUGG-CgCGCGGU---UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 104997 0.71 0.607074
Target:  5'- cCCaGGGCgCACgGCGCGCCGcGCGUc- -3'
miRNA:   3'- -GGcCUCG-GUGgCGCGCGGUuUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 39139 0.71 0.616377
Target:  5'- gCGuuGAGCCGcagguuuCCGCGCGCgAAGCAUAc -3'
miRNA:   3'- gGC--CUCGGU-------GGCGCGCGgUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 28603 0.71 0.617411
Target:  5'- uCCGcGAgGCgGCCGCGCGCUAcGCGg-- -3'
miRNA:   3'- -GGC-CU-CGgUGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 37313 0.71 0.617411
Target:  5'- gCGcAGCC-CgCGCGCGCCGAGCAc-- -3'
miRNA:   3'- gGCcUCGGuG-GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 86657 0.71 0.617411
Target:  5'- cCCGGAGCgCGCCGCgcucgacccGCGCUuuGAGCGc-- -3'
miRNA:   3'- -GGCCUCG-GUGGCG---------CGCGG--UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 109164 0.71 0.617411
Target:  5'- gCCaGAGCCgGCCGCGCGCUuguucccaAGGCGUc- -3'
miRNA:   3'- -GGcCUCGG-UGGCGCGCGG--------UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 84631 0.71 0.576204
Target:  5'- gCGGGGCCaugccgcggcuGCUGCGCGCuCGGGCGa-- -3'
miRNA:   3'- gGCCUCGG-----------UGGCGCGCG-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 77253 0.71 0.565986
Target:  5'- cCCGGGGCgGuuGCGCcCCGGGCGUc- -3'
miRNA:   3'- -GGCCUCGgUggCGCGcGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 128075 0.71 0.565986
Target:  5'- cCCGGgcGGCuCGCCGCGUGCCuugguGGCGa-- -3'
miRNA:   3'- -GGCC--UCG-GUGGCGCGCGGu----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 87346 0.71 0.57518
Target:  5'- cCUGGAGCCgAUCGCggGCGCCGAggccgacGCGUGg -3'
miRNA:   3'- -GGCCUCGG-UGGCG--CGCGGUU-------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 80895 0.71 0.576204
Target:  5'- gUCGGGcGCCACCGCaGCGCUgcccacGAGCAg-- -3'
miRNA:   3'- -GGCCU-CGGUGGCG-CGCGG------UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1103 0.71 0.576204
Target:  5'- uCUGGAGaCGCCGCGUGCCccuGCGa-- -3'
miRNA:   3'- -GGCCUCgGUGGCGCGCGGuu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 28382 0.71 0.576204
Target:  5'- gCCGGAGacggcgccccccCCGCCGCGgCGCCAGcGCGg-- -3'
miRNA:   3'- -GGCCUC------------GGUGGCGC-GCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 57100 0.71 0.576204
Target:  5'- gCUGGA-CCGCCGCGCcGCCGcgcGCAUGu -3'
miRNA:   3'- -GGCCUcGGUGGCGCG-CGGUu--UGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.