miRNA display CGI


Results 141 - 160 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 28382 0.71 0.576204
Target:  5'- gCCGGAGacggcgccccccCCGCCGCGgCGCCAGcGCGg-- -3'
miRNA:   3'- -GGCCUC------------GGUGGCGC-GCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 80895 0.71 0.576204
Target:  5'- gUCGGGcGCCACCGCaGCGCUgcccacGAGCAg-- -3'
miRNA:   3'- -GGCCU-CGGUGGCG-CGCGG------UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 87346 0.71 0.57518
Target:  5'- cCUGGAGCCgAUCGCggGCGCCGAggccgacGCGUGg -3'
miRNA:   3'- -GGCCUCGG-UGGCG--CGCGGUU-------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 128075 0.71 0.565986
Target:  5'- cCCGGgcGGCuCGCCGCGUGCCuugguGGCGa-- -3'
miRNA:   3'- -GGCC--UCG-GUGGCGCGCGGu----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 77253 0.71 0.565986
Target:  5'- cCCGGGGCgGuuGCGCcCCGGGCGUc- -3'
miRNA:   3'- -GGCCUCGgUggCGCGcGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 104118 0.71 0.606041
Target:  5'- gCCGGcguuGCCGgCGCGCgcgcgccggcaacGCCGGACAUGGu -3'
miRNA:   3'- -GGCCu---CGGUgGCGCG-------------CGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 77375 0.71 0.607074
Target:  5'- cCCGGcgagcaccagcAGCCccgugGCCaGCGCGCCGAACGg-- -3'
miRNA:   3'- -GGCC-----------UCGG-----UGG-CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104997 0.71 0.607074
Target:  5'- cCCaGGGCgCACgGCGCGCCGcGCGUc- -3'
miRNA:   3'- -GGcCUCG-GUGgCGCGCGGUuUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 84233 0.71 0.586462
Target:  5'- gCCGGGGCCGCCGCgggggaggaggGCGgCGagGACAa-- -3'
miRNA:   3'- -GGCCUCGGUGGCG-----------CGCgGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 84631 0.71 0.576204
Target:  5'- gCGGGGCCaugccgcggcuGCUGCGCGCuCGGGCGa-- -3'
miRNA:   3'- gGCCUCGG-----------UGGCGCGCG-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 53267 0.71 0.596755
Target:  5'- gCGGGG-CGCUGCGCGcCCAGGCGc-- -3'
miRNA:   3'- gGCCUCgGUGGCGCGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 132770 0.71 0.607074
Target:  5'- gCCGGcgaaaAGCCGCCGC-CGCCGAcGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGcGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 77220 0.71 0.596755
Target:  5'- gCCGcGGGCCGCCGgGC-CCGGACu--- -3'
miRNA:   3'- -GGC-CUCGGUGGCgCGcGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 18863 0.71 0.617411
Target:  5'- gCGGGGCaCGCUGCcuCGCCGAGCGg-- -3'
miRNA:   3'- gGCCUCG-GUGGCGc-GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131416 0.71 0.617411
Target:  5'- uCCGcGAgGCgGCCGCGCGCUAcGCGg-- -3'
miRNA:   3'- -GGC-CU-CGgUGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 97458 0.71 0.617411
Target:  5'- gCCGcAGCCgcgccaggGCCGCGCGCUAAGCc--- -3'
miRNA:   3'- -GGCcUCGG--------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 39139 0.71 0.616377
Target:  5'- gCGuuGAGCCGcagguuuCCGCGCGCgAAGCAUAc -3'
miRNA:   3'- gGC--CUCGGU-------GGCGCGCGgUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 103184 0.7 0.627761
Target:  5'- aCGGGGcCCGCCGC-CGCCGcGGCAg-- -3'
miRNA:   3'- gGCCUC-GGUGGCGcGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 63243 0.7 0.627761
Target:  5'- gCCGGGuccGCCGCUGCaGCGCCAucaccGCGUc- -3'
miRNA:   3'- -GGCCU---CGGUGGCG-CGCGGUu----UGUAuu -5'
6424 3' -56.3 NC_001847.1 + 30000 0.7 0.638114
Target:  5'- gCgGGAGCCGCCGCugccCGCCc-GCGUGc -3'
miRNA:   3'- -GgCCUCGGUGGCGc---GCGGuuUGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.