miRNA display CGI


Results 81 - 100 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 27292 0.73 0.496126
Target:  5'- gUCGGAGCCGCCGCcgguCGcCCGAGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCGc---GC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 130105 0.73 0.496126
Target:  5'- gUCGGAGCCGCCGCcgguCGcCCGAGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCGc---GC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 24228 0.73 0.502951
Target:  5'- cUCGGcgaucuccacguucAGCCGCCGCGCGgCGGGCGa-- -3'
miRNA:   3'- -GGCC--------------UCGGUGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 105810 0.73 0.505888
Target:  5'- gCUGGAGCCgcgcgcgcuccACCGCgucgcgggccGCGCCGAGCAg-- -3'
miRNA:   3'- -GGCCUCGG-----------UGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 130615 0.73 0.505888
Target:  5'- gCgGGGGCCACCGaggGCGCCGAGg---- -3'
miRNA:   3'- -GgCCUCGGUGGCg--CGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 48154 0.73 0.505888
Target:  5'- gCCGG-GCCGgCGCGCGCCGGc----- -3'
miRNA:   3'- -GGCCuCGGUgGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 46263 0.73 0.505888
Target:  5'- gCgGGAGCCGCCGCcGCcGCCGcGCGc-- -3'
miRNA:   3'- -GgCCUCGGUGGCG-CG-CGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 62089 0.73 0.505888
Target:  5'- gCGG-GUCGCCGCGCGUCAuguACAg-- -3'
miRNA:   3'- gGCCuCGGUGGCGCGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 27802 0.73 0.505888
Target:  5'- gCgGGGGCCACCGaggGCGCCGAGg---- -3'
miRNA:   3'- -GgCCUCGGUGGCg--CGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 2997 0.73 0.505888
Target:  5'- gCUGGAGCCgcgcgcgcuccACCGCgucgcgggccGCGCCGAGCAg-- -3'
miRNA:   3'- -GGCCUCGG-----------UGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 115499 0.72 0.514744
Target:  5'- gCCGGgcccgcaAGCgGCCGCGCGCCGAcgccgGCGc-- -3'
miRNA:   3'- -GGCC-------UCGgUGGCGCGCGGUU-----UGUauu -5'
6424 3' -56.3 NC_001847.1 + 36612 0.72 0.515732
Target:  5'- aCCGGGuguGCUACCGCGCGgUggGCGa-- -3'
miRNA:   3'- -GGCCU---CGGUGGCGCGCgGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 59279 0.72 0.515732
Target:  5'- aUGGAcGCCGCCGCGCGC--AACAc-- -3'
miRNA:   3'- gGCCU-CGGUGGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 42994 0.72 0.515732
Target:  5'- gCCGGGaacGCCGCCggggggGCGCGCCGGGCc--- -3'
miRNA:   3'- -GGCCU---CGGUGG------CGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 82049 0.72 0.515732
Target:  5'- gCGG-GCCGCCGCccCGCCGAACGc-- -3'
miRNA:   3'- gGCCuCGGUGGCGc-GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38216 0.72 0.525651
Target:  5'- gCGGAgGCCcggGCCGCGCGCCucuACGc-- -3'
miRNA:   3'- gGCCU-CGG---UGGCGCGCGGuu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 19351 0.72 0.535642
Target:  5'- gCCGGGuCUugCGCGCGCCcGACGg-- -3'
miRNA:   3'- -GGCCUcGGugGCGCGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 132178 0.72 0.535642
Target:  5'- cCCGGcGgCGCUGCGCGCCGAGgCGg-- -3'
miRNA:   3'- -GGCCuCgGUGGCGCGCGGUUU-GUauu -5'
6424 3' -56.3 NC_001847.1 + 29365 0.72 0.535642
Target:  5'- cCCGGcGgCGCUGCGCGCCGAGgCGg-- -3'
miRNA:   3'- -GGCCuCgGUGGCGCGCGGUUU-GUauu -5'
6424 3' -56.3 NC_001847.1 + 133207 0.72 0.545699
Target:  5'- -aGGAGCUcugcGCCGCGCGCCGGc----- -3'
miRNA:   3'- ggCCUCGG----UGGCGCGCGGUUuguauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.