miRNA display CGI


Results 101 - 120 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 55014 0.72 0.545699
Target:  5'- gCUGGAGuCCAUgCGCGCGUCGGGCGc-- -3'
miRNA:   3'- -GGCCUC-GGUG-GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 69749 0.72 0.545699
Target:  5'- gUGGccuGCCACCGCGCGCUGuuCAg-- -3'
miRNA:   3'- gGCCu--CGGUGGCGCGCGGUuuGUauu -5'
6424 3' -56.3 NC_001847.1 + 133207 0.72 0.545699
Target:  5'- -aGGAGCUcugcGCCGCGCGCCGGc----- -3'
miRNA:   3'- ggCCUCGG----UGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 60876 0.72 0.545699
Target:  5'- gCGGGGCgGCCGCGC-CCGGgaagaguuGCGUGAc -3'
miRNA:   3'- gGCCUCGgUGGCGCGcGGUU--------UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 80674 0.72 0.555816
Target:  5'- -gGGAGCCgaacgGCUGCGCGCCGgcGGCGg-- -3'
miRNA:   3'- ggCCUCGG-----UGGCGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 31187 0.72 0.555816
Target:  5'- gCCGGAGCCGCgCGCcgagGCGCCGc------ -3'
miRNA:   3'- -GGCCUCGGUG-GCG----CGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 2917 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 64354 0.72 0.555816
Target:  5'- cCCGGccCCGCCGCGaagcgagcCGCCAGACAa-- -3'
miRNA:   3'- -GGCCucGGUGGCGC--------GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33885 0.72 0.555816
Target:  5'- -aGGcGCCGCCGCGCGUggccgCGGGCGUGc -3'
miRNA:   3'- ggCCuCGGUGGCGCGCG-----GUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 105730 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 134000 0.72 0.555816
Target:  5'- gCCGGAGCCGCgCGCcgagGCGCCGc------ -3'
miRNA:   3'- -GGCCUCGGUG-GCG----CGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 19398 0.71 0.564967
Target:  5'- gCCGGugugugugcccauGGCCACCaGCGCGCCcguGGCGg-- -3'
miRNA:   3'- -GGCC-------------UCGGUGG-CGCGCGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 76854 0.71 0.565986
Target:  5'- gCCGGccGCCGCCGuCGCcgcgGCCGAGCAc-- -3'
miRNA:   3'- -GGCCu-CGGUGGC-GCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 128075 0.71 0.565986
Target:  5'- cCCGGgcGGCuCGCCGCGUGCCuugguGGCGa-- -3'
miRNA:   3'- -GGCC--UCG-GUGGCGCGCGGu----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 77253 0.71 0.565986
Target:  5'- cCCGGGGCgGuuGCGCcCCGGGCGUc- -3'
miRNA:   3'- -GGCCUCGgUggCGCGcGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 87346 0.71 0.57518
Target:  5'- cCUGGAGCCgAUCGCggGCGCCGAggccgacGCGUGg -3'
miRNA:   3'- -GGCCUCGG-UGGCG--CGCGGUU-------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 80895 0.71 0.576204
Target:  5'- gUCGGGcGCCACCGCaGCGCUgcccacGAGCAg-- -3'
miRNA:   3'- -GGCCU-CGGUGGCG-CGCGG------UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 28382 0.71 0.576204
Target:  5'- gCCGGAGacggcgccccccCCGCCGCGgCGCCAGcGCGg-- -3'
miRNA:   3'- -GGCCUC------------GGUGGCGC-GCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 30796 0.71 0.576204
Target:  5'- gCGGAcGCCGCCGCGUcuGCCGccgcGGCAa-- -3'
miRNA:   3'- gGCCU-CGGUGGCGCG--CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1103 0.71 0.576204
Target:  5'- uCUGGAGaCGCCGCGUGCCccuGCGa-- -3'
miRNA:   3'- -GGCCUCgGUGGCGCGCGGuu-UGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.