miRNA display CGI


Results 121 - 140 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 1103 0.71 0.576204
Target:  5'- uCUGGAGaCGCCGCGUGCCccuGCGa-- -3'
miRNA:   3'- -GGCCUCgGUGGCGCGCGGuu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 30796 0.71 0.576204
Target:  5'- gCGGAcGCCGCCGCGUcuGCCGccgcGGCAa-- -3'
miRNA:   3'- gGCCU-CGGUGGCGCG--CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 80895 0.71 0.576204
Target:  5'- gUCGGGcGCCACCGCaGCGCUgcccacGAGCAg-- -3'
miRNA:   3'- -GGCCU-CGGUGGCG-CGCGG------UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 74738 0.71 0.586462
Target:  5'- uUCGGcGCUugCGCGCG-CGAGCAUGc -3'
miRNA:   3'- -GGCCuCGGugGCGCGCgGUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 44606 0.71 0.586462
Target:  5'- gCGaGGGCCGCCaGgGCGCCGuucAGCAUGc -3'
miRNA:   3'- gGC-CUCGGUGG-CgCGCGGU---UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 84233 0.71 0.586462
Target:  5'- gCCGGGGCCGCCGCgggggaggaggGCGgCGagGACAa-- -3'
miRNA:   3'- -GGCCUCGGUGGCG-----------CGCgGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81404 0.71 0.586462
Target:  5'- gCCGGAuccgcGCUacGCCGCGCGCCGAu----- -3'
miRNA:   3'- -GGCCU-----CGG--UGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 3685 0.71 0.596755
Target:  5'- gCCGcGAGCCugCGCGCaCCAcAgGUAGg -3'
miRNA:   3'- -GGC-CUCGGugGCGCGcGGUuUgUAUU- -5'
6424 3' -56.3 NC_001847.1 + 97076 0.71 0.596755
Target:  5'- gCGGcGGCCGCCGCGCGCa--GCuUAGc -3'
miRNA:   3'- gGCC-UCGGUGGCGCGCGguuUGuAUU- -5'
6424 3' -56.3 NC_001847.1 + 67683 0.71 0.596755
Target:  5'- gCCGcGGCCGCCGCGCGCgCGcugGACc--- -3'
miRNA:   3'- -GGCcUCGGUGGCGCGCG-GU---UUGuauu -5'
6424 3' -56.3 NC_001847.1 + 32138 0.71 0.596755
Target:  5'- gCUGGGcGCCGCCGCGC-CCGcGCAc-- -3'
miRNA:   3'- -GGCCU-CGGUGGCGCGcGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 35453 0.71 0.596755
Target:  5'- aCGGcGGCCcgcGCCGCGCGCC--GCAa-- -3'
miRNA:   3'- gGCC-UCGG---UGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 53267 0.71 0.596755
Target:  5'- gCGGGG-CGCUGCGCGcCCAGGCGc-- -3'
miRNA:   3'- gGCCUCgGUGGCGCGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 45854 0.71 0.596755
Target:  5'- aCGGccgaggccucGGCCGCgGCGCGCgAAACAg-- -3'
miRNA:   3'- gGCC----------UCGGUGgCGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 77220 0.71 0.596755
Target:  5'- gCCGcGGGCCGCCGgGC-CCGGACu--- -3'
miRNA:   3'- -GGC-CUCGGUGGCgCGcGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 104118 0.71 0.606041
Target:  5'- gCCGGcguuGCCGgCGCGCgcgcgccggcaacGCCGGACAUGGu -3'
miRNA:   3'- -GGCCu---CGGUgGCGCG-------------CGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 42397 0.71 0.606041
Target:  5'- gCGGAGCCGCauguucgCGCGCGCUGacGACGg-- -3'
miRNA:   3'- gGCCUCGGUG-------GCGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 63950 0.71 0.607074
Target:  5'- gCgGGGGCagCAgCGCGUGCCAGGCGUc- -3'
miRNA:   3'- -GgCCUCG--GUgGCGCGCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 29957 0.71 0.607074
Target:  5'- gCCGGcgaaaAGCCGCCGC-CGCCGAcGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGcGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 2298 0.71 0.607074
Target:  5'- gCGGGGCCGCCGgGCGgCAugggccccAGCAc-- -3'
miRNA:   3'- gGCCUCGGUGGCgCGCgGU--------UUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.