miRNA display CGI


Results 141 - 160 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 29957 0.71 0.607074
Target:  5'- gCCGGcgaaaAGCCGCCGC-CGCCGAcGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGcGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 63950 0.71 0.607074
Target:  5'- gCgGGGGCagCAgCGCGUGCCAGGCGUc- -3'
miRNA:   3'- -GgCCUCG--GUgGCGCGCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 2298 0.71 0.607074
Target:  5'- gCGGGGCCGCCGgGCGgCAugggccccAGCAc-- -3'
miRNA:   3'- gGCCUCGGUGGCgCGCgGU--------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 59226 0.71 0.607074
Target:  5'- gCGGcGCCACCGCGUGCuCGuguuACGUc- -3'
miRNA:   3'- gGCCuCGGUGGCGCGCG-GUu---UGUAuu -5'
6424 3' -56.3 NC_001847.1 + 31659 0.71 0.607074
Target:  5'- cCCGGAGC--CCGCGCGCCccgagGAGC-UAAg -3'
miRNA:   3'- -GGCCUCGguGGCGCGCGG-----UUUGuAUU- -5'
6424 3' -56.3 NC_001847.1 + 101455 0.71 0.607074
Target:  5'- gCGGAaacuGCCGCCGCGCgGCCGcaagGGCGg-- -3'
miRNA:   3'- gGCCU----CGGUGGCGCG-CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 132770 0.71 0.607074
Target:  5'- gCCGGcgaaaAGCCGCCGC-CGCCGAcGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGcGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 105111 0.71 0.607074
Target:  5'- gCGGGGCCGCCGgGCGgCAugggccccAGCAc-- -3'
miRNA:   3'- gGCCUCGGUGGCgCGCgGU--------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 39139 0.71 0.616377
Target:  5'- gCGuuGAGCCGcagguuuCCGCGCGCgAAGCAUAc -3'
miRNA:   3'- gGC--CUCGGU-------GGCGCGCGgUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 109164 0.71 0.617411
Target:  5'- gCCaGAGCCgGCCGCGCGCUuguucccaAGGCGUc- -3'
miRNA:   3'- -GGcCUCGG-UGGCGCGCGG--------UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 28603 0.71 0.617411
Target:  5'- uCCGcGAgGCgGCCGCGCGCUAcGCGg-- -3'
miRNA:   3'- -GGC-CU-CGgUGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 74494 0.71 0.617411
Target:  5'- gCGGAcGCgGCCGCGCGCacccucgugcUGAACAUGGu -3'
miRNA:   3'- gGCCU-CGgUGGCGCGCG----------GUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 18863 0.71 0.617411
Target:  5'- gCGGGGCaCGCUGCcuCGCCGAGCGg-- -3'
miRNA:   3'- gGCCUCG-GUGGCGc-GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 97458 0.71 0.617411
Target:  5'- gCCGcAGCCgcgccaggGCCGCGCGCUAAGCc--- -3'
miRNA:   3'- -GGCcUCGG--------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 131416 0.71 0.617411
Target:  5'- uCCGcGAgGCgGCCGCGCGCUAcGCGg-- -3'
miRNA:   3'- -GGC-CU-CGgUGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 37313 0.71 0.617411
Target:  5'- gCGcAGCC-CgCGCGCGCCGAGCAc-- -3'
miRNA:   3'- gGCcUCGGuG-GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 86657 0.71 0.617411
Target:  5'- cCCGGAGCgCGCCGCgcucgacccGCGCUuuGAGCGc-- -3'
miRNA:   3'- -GGCCUCG-GUGGCG---------CGCGG--UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 103184 0.7 0.627761
Target:  5'- aCGGGGcCCGCCGC-CGCCGcGGCAg-- -3'
miRNA:   3'- gGCCUC-GGUGGCGcGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 100692 0.7 0.627761
Target:  5'- gCCGGcGGCCACCGCG-GCCu--CGUc- -3'
miRNA:   3'- -GGCC-UCGGUGGCGCgCGGuuuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 96025 0.7 0.627761
Target:  5'- gCGGcgcgucGGCCGCCGCguuGCGCUAAGCGc-- -3'
miRNA:   3'- gGCC------UCGGUGGCG---CGCGGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.