miRNA display CGI


Results 161 - 180 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 103184 0.7 0.627761
Target:  5'- aCGGGGcCCGCCGC-CGCCGcGGCAg-- -3'
miRNA:   3'- gGCCUC-GGUGGCGcGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 87689 0.7 0.627761
Target:  5'- gCUGGGGCUGCUGCGgCGCCGcGGCGg-- -3'
miRNA:   3'- -GGCCUCGGUGGCGC-GCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 32895 0.7 0.627761
Target:  5'- aCGGuGCgCGCCGCGCG-CGAGCGc-- -3'
miRNA:   3'- gGCCuCG-GUGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 49607 0.7 0.638114
Target:  5'- gCgGGAGCuCGgCGCGCGCCAcccGGCGc-- -3'
miRNA:   3'- -GgCCUCG-GUgGCGCGCGGU---UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 30000 0.7 0.638114
Target:  5'- gCgGGAGCCGCCGCugccCGCCc-GCGUGc -3'
miRNA:   3'- -GgCCUCGGUGGCGc---GCGGuuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 100552 0.7 0.638114
Target:  5'- -gGGAGCCgGCCGCGgcgauuauugcCGCCAGGCGc-- -3'
miRNA:   3'- ggCCUCGG-UGGCGC-----------GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134885 0.7 0.638114
Target:  5'- cCCGGgcucgGGCCcCUGgGCGCCGGGCGUc- -3'
miRNA:   3'- -GGCC-----UCGGuGGCgCGCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 68935 0.7 0.638114
Target:  5'- gCCcGAGCCGCCGCugggcgGCGCCGAuGCGg-- -3'
miRNA:   3'- -GGcCUCGGUGGCG------CGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 77332 0.7 0.638114
Target:  5'- gCGGGGCaCugCGCGCuGCUggGCGg-- -3'
miRNA:   3'- gGCCUCG-GugGCGCG-CGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 79069 0.7 0.638114
Target:  5'- gCCGGAGCCgGgCGCGUGC--GACGUGu -3'
miRNA:   3'- -GGCCUCGG-UgGCGCGCGguUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 32072 0.7 0.638114
Target:  5'- cCCGGgcucgGGCCcCUGgGCGCCGGGCGUc- -3'
miRNA:   3'- -GGCC-----UCGGuGGCgCGCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 118791 0.7 0.638114
Target:  5'- aCCGGcAGCCGCCaGCGCcuCCAGGCc--- -3'
miRNA:   3'- -GGCC-UCGGUGG-CGCGc-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 115796 0.7 0.638114
Target:  5'- gCGGAGCCGcugcggcuCCGCGCGCU--GCGc-- -3'
miRNA:   3'- gGCCUCGGU--------GGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 114113 0.7 0.638114
Target:  5'- cUCGGGGCaagcuugcuCGCaCGCGCGCUcgGCGUGAg -3'
miRNA:   3'- -GGCCUCG---------GUG-GCGCGCGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 132813 0.7 0.638114
Target:  5'- gCgGGAGCCGCCGCugccCGCCc-GCGUGc -3'
miRNA:   3'- -GgCCUCGGUGGCGc---GCGGuuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 128467 0.7 0.648462
Target:  5'- cCCGGccGGCCGCCGCG-GCCuAGCc--- -3'
miRNA:   3'- -GGCC--UCGGUGGCGCgCGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 46773 0.7 0.648462
Target:  5'- gCGGGGCCGguccgccgcgcCCGCGCGCCccuCGUu- -3'
miRNA:   3'- gGCCUCGGU-----------GGCGCGCGGuuuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 101519 0.7 0.648462
Target:  5'- gCGGucAGCCGCCGCGCccgucGCCAGgGCGUc- -3'
miRNA:   3'- gGCC--UCGGUGGCGCG-----CGGUU-UGUAuu -5'
6424 3' -56.3 NC_001847.1 + 46203 0.7 0.648462
Target:  5'- gCCGGcGGCgGCCGC-CGCCGGGCcgGc -3'
miRNA:   3'- -GGCC-UCGgUGGCGcGCGGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 10580 0.7 0.648462
Target:  5'- gCCGGcGGCCcccCCGCGCGCgCGGGCcgGc -3'
miRNA:   3'- -GGCC-UCGGu--GGCGCGCG-GUUUGuaUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.