miRNA display CGI


Results 181 - 200 of 611 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 3983 0.67 0.823601
Target:  5'- gCCGuGAGCaCGCCaGCGCgGCCAaguuAACAg-- -3'
miRNA:   3'- -GGC-CUCG-GUGG-CGCG-CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 133981 0.67 0.823601
Target:  5'- gCCGGGGCUgggaGCgCGCGCGgCAucGGCAg-- -3'
miRNA:   3'- -GGCCUCGG----UG-GCGCGCgGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 113965 0.67 0.823601
Target:  5'- gCCGGGcgcGUCGCCGCagaaGCGCUccagGAGCGUAu -3'
miRNA:   3'- -GGCCU---CGGUGGCG----CGCGG----UUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 57238 0.67 0.823601
Target:  5'- gCCGaGAggugcGCCACCGC-CGCCGcGCAg-- -3'
miRNA:   3'- -GGC-CU-----CGGUGGCGcGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 41340 0.67 0.823601
Target:  5'- gCGGggacucGGCCGCCGCG-GCCGcGCGg-- -3'
miRNA:   3'- gGCC------UCGGUGGCGCgCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 93537 0.67 0.823601
Target:  5'- cCCGGAGCgC-CCGgguuaCGUGCCGAGCcgGc -3'
miRNA:   3'- -GGCCUCG-GuGGC-----GCGCGGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 31012 0.67 0.823601
Target:  5'- uCCGGcguuGCCGgCGCGCGCgCGccGGCAa-- -3'
miRNA:   3'- -GGCCu---CGGUgGCGCGCG-GU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 90186 0.67 0.823601
Target:  5'- gCGGGGCUGCUgcgGCGCGCCGu------ -3'
miRNA:   3'- gGCCUCGGUGG---CGCGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 85904 0.67 0.823601
Target:  5'- gCCGGcGCCACC-C-CGCCGuuuGCGUGGa -3'
miRNA:   3'- -GGCCuCGGUGGcGcGCGGUu--UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 92422 0.67 0.823601
Target:  5'- cCCGcGcGGCCGcCCGcCGCGCCAAAUc--- -3'
miRNA:   3'- -GGC-C-UCGGU-GGC-GCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 43266 0.67 0.823601
Target:  5'- cCCGGGGggcacCUGCUGCGaCGCCGcGCGUGc -3'
miRNA:   3'- -GGCCUC-----GGUGGCGC-GCGGUuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 104757 0.67 0.823601
Target:  5'- cUCGG-GCCGCCgGCGCucguccucGCCGGGCGg-- -3'
miRNA:   3'- -GGCCuCGGUGG-CGCG--------CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 98551 0.67 0.823601
Target:  5'- cCCGGuAGCagaGCgGCGUGCCGucGGCGUc- -3'
miRNA:   3'- -GGCC-UCGg--UGgCGCGCGGU--UUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 8634 0.67 0.823601
Target:  5'- -gGGAGCgGCCGCugcggacucggGCGcCCAGACGa-- -3'
miRNA:   3'- ggCCUCGgUGGCG-----------CGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 11181 0.67 0.823601
Target:  5'- gCUGGGGCUGCCGCugguccGCGCgGGGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCG------CGCGgUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 132856 0.67 0.823601
Target:  5'- cCCGGcGGCC-CCGC-CGCCGAcgGCGg-- -3'
miRNA:   3'- -GGCC-UCGGuGGCGcGCGGUU--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 16256 0.67 0.823601
Target:  5'- cCCGGccccGGCC-CCGUGCaCCGAGCGc-- -3'
miRNA:   3'- -GGCC----UCGGuGGCGCGcGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 79984 0.67 0.823601
Target:  5'- -gGcGAGCCGCUGCGCGgCGGugAc-- -3'
miRNA:   3'- ggC-CUCGGUGGCGCGCgGUUugUauu -5'
6424 3' -56.3 NC_001847.1 + 32378 0.67 0.823601
Target:  5'- gCCGGcGUCGCgggCGuCGCGCCuuGCGUGGg -3'
miRNA:   3'- -GGCCuCGGUG---GC-GCGCGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 12047 0.67 0.823601
Target:  5'- gCUGGAcGCC-CUGCGCGCUgcGGACGc-- -3'
miRNA:   3'- -GGCCU-CGGuGGCGCGCGG--UUUGUauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.