miRNA display CGI


Results 101 - 120 of 611 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 113046 0.66 0.856545
Target:  5'- gCCGGcagcAGCCGCaGCGCGUCGGcGCAc-- -3'
miRNA:   3'- -GGCC----UCGGUGgCGCGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 1503 0.66 0.856545
Target:  5'- cUCGGGGUagaGCCGCGCG-UAGGCGg-- -3'
miRNA:   3'- -GGCCUCGg--UGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 54284 0.66 0.856545
Target:  5'- gCCGGAcgGCCucgaCGCGCGCCGc------ -3'
miRNA:   3'- -GGCCU--CGGug--GCGCGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 69327 0.66 0.856545
Target:  5'- gCCGuGGGCCagcaGCCGCGCaGCUagcgGAGCGUc- -3'
miRNA:   3'- -GGC-CUCGG----UGGCGCG-CGG----UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 80459 0.66 0.856545
Target:  5'- gCGGGcGCCGCCGC-CGCCGu------ -3'
miRNA:   3'- gGCCU-CGGUGGCGcGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 73877 0.66 0.856545
Target:  5'- gCGGcGCC-CgCGCGCGCCGcgGACGc-- -3'
miRNA:   3'- gGCCuCGGuG-GCGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 97553 0.66 0.854184
Target:  5'- gCCGGcccccGGCCGCCGCagccgcagcggccaGCGCCGccGCGUc- -3'
miRNA:   3'- -GGCC-----UCGGUGGCG--------------CGCGGUu-UGUAuu -5'
6424 3' -56.3 NC_001847.1 + 108796 0.66 0.854184
Target:  5'- cCCGGGagagcugcauguacGCCGCCuucGCGCGCCugggGACGc-- -3'
miRNA:   3'- -GGCCU--------------CGGUGG---CGCGCGGu---UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 121831 0.66 0.854184
Target:  5'- gCCGGAGCCcgucugccucgacgACCGCGaguGCUucaccGACGUGg -3'
miRNA:   3'- -GGCCUCGG--------------UGGCGCg--CGGu----UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 50890 0.66 0.854184
Target:  5'- gCCaGGAGCUcaugcaggccacguACCGCGCgGCCGuggaaAACGUGc -3'
miRNA:   3'- -GG-CCUCGG--------------UGGCGCG-CGGU-----UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 96146 0.66 0.848603
Target:  5'- gCCGGAGCCggaACCGgG-GCCGGAa---- -3'
miRNA:   3'- -GGCCUCGG---UGGCgCgCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 30398 0.66 0.848603
Target:  5'- gCCGGcGGCCcgagugGCCGcCGCGCCGcGGCGg-- -3'
miRNA:   3'- -GGCC-UCGG------UGGC-GCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 23880 0.66 0.848603
Target:  5'- cCCGGcGCCGCCuccgacccgGCGCcGCCuccgacccGACAUGAu -3'
miRNA:   3'- -GGCCuCGGUGG---------CGCG-CGGu-------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 64014 0.66 0.848603
Target:  5'- gCCGGGGUCGgCGacguaCGCGCCGAAgAg-- -3'
miRNA:   3'- -GGCCUCGGUgGC-----GCGCGGUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 69517 0.66 0.848603
Target:  5'- gCGGcgcAGCCaaGCCcUGCGCCGAGCAg-- -3'
miRNA:   3'- gGCC---UCGG--UGGcGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81289 0.66 0.848603
Target:  5'- gUCGGcGCCGCCaGCGCcGCC-AGCGc-- -3'
miRNA:   3'- -GGCCuCGGUGG-CGCG-CGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 116205 0.66 0.848603
Target:  5'- aCGGAcGCCGCgGCGgCGCUggaAGACAc-- -3'
miRNA:   3'- gGCCU-CGGUGgCGC-GCGG---UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81685 0.66 0.848603
Target:  5'- aUCGucucGCCGCCGUagaGCGCCAGGCGc-- -3'
miRNA:   3'- -GGCcu--CGGUGGCG---CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 30493 0.66 0.848603
Target:  5'- aUCGGcgcGGCCcucgGgCGCGCGCUAGACGa-- -3'
miRNA:   3'- -GGCC---UCGG----UgGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 119568 0.66 0.848603
Target:  5'- --cGAGCCGCCGCcugcCGCCGAugGg-- -3'
miRNA:   3'- ggcCUCGGUGGCGc---GCGGUUugUauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.