miRNA display CGI


Results 121 - 140 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 35213 0.66 0.848603
Target:  5'- gCUGGGcGCC-CUGCGCG-CGGACGUGc -3'
miRNA:   3'- -GGCCU-CGGuGGCGCGCgGUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 104716 0.66 0.848603
Target:  5'- cCCGGcGCCuCCGCGCccGCCAcgAGCu--- -3'
miRNA:   3'- -GGCCuCGGuGGCGCG--CGGU--UUGuauu -5'
6424 3' -56.3 NC_001847.1 + 36981 0.66 0.848603
Target:  5'- gCCGGcgAGCgGgCC-CGCGCCGAGCGg-- -3'
miRNA:   3'- -GGCC--UCGgU-GGcGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 60300 0.66 0.848603
Target:  5'- gCGGGGCgGCgggcggcagcgCGCGCGCCAccugcucgcGCGUGAg -3'
miRNA:   3'- gGCCUCGgUG-----------GCGCGCGGUu--------UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 81685 0.66 0.848603
Target:  5'- aUCGucucGCCGCCGUagaGCGCCAGGCGc-- -3'
miRNA:   3'- -GGCcu--CGGUGGCG---CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 6347 0.66 0.848603
Target:  5'- cCCGGcGGCaACCGCGC-CgCGGGCGUAGc -3'
miRNA:   3'- -GGCC-UCGgUGGCGCGcG-GUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 116205 0.66 0.848603
Target:  5'- aCGGAcGCCGCgGCGgCGCUggaAGACAc-- -3'
miRNA:   3'- gGCCU-CGGUGgCGC-GCGG---UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 82631 0.66 0.848603
Target:  5'- cCCGGGccgcGCgGCCGCGCGCUccguCAg-- -3'
miRNA:   3'- -GGCCU----CGgUGGCGCGCGGuuu-GUauu -5'
6424 3' -56.3 NC_001847.1 + 119568 0.66 0.848603
Target:  5'- --cGAGCCGCCGCcugcCGCCGAugGg-- -3'
miRNA:   3'- ggcCUCGGUGGCGc---GCGGUUugUauu -5'
6424 3' -56.3 NC_001847.1 + 30493 0.66 0.848603
Target:  5'- aUCGGcgcGGCCcucgGgCGCGCGCUAGACGa-- -3'
miRNA:   3'- -GGCC---UCGG----UgGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 69517 0.66 0.848603
Target:  5'- gCGGcgcAGCCaaGCCcUGCGCCGAGCAg-- -3'
miRNA:   3'- gGCC---UCGG--UGGcGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 64014 0.66 0.848603
Target:  5'- gCCGGGGUCGgCGacguaCGCGCCGAAgAg-- -3'
miRNA:   3'- -GGCCUCGGUgGC-----GCGCGGUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 23880 0.66 0.848603
Target:  5'- cCCGGcGCCGCCuccgacccgGCGCcGCCuccgacccGACAUGAu -3'
miRNA:   3'- -GGCCuCGGUGG---------CGCG-CGGu-------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 5623 0.66 0.847798
Target:  5'- gUGGGcGCCGCggucccgCGCGCGCCAAAgAg-- -3'
miRNA:   3'- gGCCU-CGGUG-------GCGCGCGGUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 1792 0.66 0.847798
Target:  5'- gUCGaGAGCagcagcaCGCCcuGCGCGCCGAGCGc-- -3'
miRNA:   3'- -GGC-CUCG-------GUGG--CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 99572 0.66 0.847798
Target:  5'- gCCGGcGCCGCuccaaagCGCGCacGCCAAGCu--- -3'
miRNA:   3'- -GGCCuCGGUG-------GCGCG--CGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 104605 0.66 0.847798
Target:  5'- gUCGaGAGCagcagcaCGCCcuGCGCGCCGAGCGc-- -3'
miRNA:   3'- -GGC-CUCG-------GUGG--CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 61421 0.66 0.846991
Target:  5'- gCCGGcccucgacgcccGCgGCCGCGCcGCCGGGCGc-- -3'
miRNA:   3'- -GGCCu-----------CGgUGGCGCG-CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38024 0.66 0.846181
Target:  5'- gCGGGugcugugggcgcgcGCCGCCGCGcCGCCGcucGCAa-- -3'
miRNA:   3'- gGCCU--------------CGGUGGCGC-GCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 75719 0.66 0.84046
Target:  5'- gCCGcGGGCCGCCGC-CGUgGAugGc-- -3'
miRNA:   3'- -GGC-CUCGGUGGCGcGCGgUUugUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.