miRNA display CGI


Results 141 - 160 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 105695 0.66 0.84046
Target:  5'- gCGGGccGCCgcGCCGCGCGUCGAGu---- -3'
miRNA:   3'- gGCCU--CGG--UGGCGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 99761 0.66 0.84046
Target:  5'- cCCGGcagugAGCCGCCGCG-GCUuuGGGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGCgCGG--UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 15994 0.66 0.84046
Target:  5'- cCCGcGGCgGCCGCGgCGCC-GACGa-- -3'
miRNA:   3'- -GGCcUCGgUGGCGC-GCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 77465 0.66 0.84046
Target:  5'- gCUGGGGCgggCGCCGgGCGCCcGGCc--- -3'
miRNA:   3'- -GGCCUCG---GUGGCgCGCGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 54389 0.66 0.84046
Target:  5'- gCGG-GCgGCCGCGgGCgAGGCGg-- -3'
miRNA:   3'- gGCCuCGgUGGCGCgCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101383 0.66 0.84046
Target:  5'- gCgGGGGCUGcCCGCGgCGCCGccGGCAa-- -3'
miRNA:   3'- -GgCCUCGGU-GGCGC-GCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131986 0.66 0.84046
Target:  5'- gCUGGAGgcggcCCGCCGCGCcGCCG-GCGc-- -3'
miRNA:   3'- -GGCCUC-----GGUGGCGCG-CGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 29173 0.66 0.84046
Target:  5'- gCUGGAGgcggcCCGCCGCGCcGCCG-GCGc-- -3'
miRNA:   3'- -GGCCUC-----GGUGGCGCG-CGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 118515 0.66 0.84046
Target:  5'- aCGGcaaAGCCGCCGCGCccccccccaaaGaCCAcGCAUGu -3'
miRNA:   3'- gGCC---UCGGUGGCGCG-----------C-GGUuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 73191 0.66 0.84046
Target:  5'- gCGGAGUCggcccgcgcggGCCGCGCcGCCGcuGACGc-- -3'
miRNA:   3'- gGCCUCGG-----------UGGCGCG-CGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 71090 0.66 0.84046
Target:  5'- gCCGGccagGGCguCCaGCGC-CCAGGCGUGAa -3'
miRNA:   3'- -GGCC----UCGguGG-CGCGcGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 2882 0.66 0.84046
Target:  5'- gCGGGccGCCgcGCCGCGCGUCGAGu---- -3'
miRNA:   3'- gGCCU--CGG--UGGCGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 75719 0.66 0.84046
Target:  5'- gCCGcGGGCCGCCGC-CGUgGAugGc-- -3'
miRNA:   3'- -GGC-CUCGGUGGCGcGCGgUUugUauu -5'
6424 3' -56.3 NC_001847.1 + 79304 0.66 0.84046
Target:  5'- gCCGGcuGGCaGCUGCGCGUCAugGACGa-- -3'
miRNA:   3'- -GGCC--UCGgUGGCGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 9107 0.67 0.835481
Target:  5'- cUCGGAGCCACCGCaG-GCCcugguuguuuuuuACGUGg -3'
miRNA:   3'- -GGCCUCGGUGGCG-CgCGGuu-----------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 39143 0.67 0.835481
Target:  5'- gCUGGGGCUcgaaaaucgcugccgGCCGCGCaGCCGcGGCAg-- -3'
miRNA:   3'- -GGCCUCGG---------------UGGCGCG-CGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 35936 0.67 0.832124
Target:  5'- gCGGcgcGCCGCCGCGCgGCCGc------ -3'
miRNA:   3'- gGCCu--CGGUGGCGCG-CGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 18743 0.67 0.832124
Target:  5'- cCCGGGGCCcagagcGCCGC-CGCCGcGGC-UAAg -3'
miRNA:   3'- -GGCCUCGG------UGGCGcGCGGU-UUGuAUU- -5'
6424 3' -56.3 NC_001847.1 + 18941 0.67 0.832124
Target:  5'- uCCaGcGCCGCCGCGgCGuCCGGGCGg-- -3'
miRNA:   3'- -GGcCuCGGUGGCGC-GC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 18530 0.67 0.832124
Target:  5'- gCGGGcgcGCCGCCGUccGCGCCGcagAGCGg-- -3'
miRNA:   3'- gGCCU---CGGUGGCG--CGCGGU---UUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.