miRNA display CGI


Results 161 - 180 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 119902 0.67 0.832124
Target:  5'- gCGuGGCCGCCGcCGCcGCCGGcGCGUAc -3'
miRNA:   3'- gGCcUCGGUGGC-GCG-CGGUU-UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 98283 0.67 0.832124
Target:  5'- cCCGcguaGAGCUcgGCCGC-CGCCGAGCGc-- -3'
miRNA:   3'- -GGC----CUCGG--UGGCGcGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 35936 0.67 0.832124
Target:  5'- gCGGcgcGCCGCCGCGCgGCCGc------ -3'
miRNA:   3'- gGCCu--CGGUGGCGCG-CGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 18530 0.67 0.832124
Target:  5'- gCGGGcgcGCCGCCGUccGCGCCGcagAGCGg-- -3'
miRNA:   3'- gGCCU---CGGUGGCG--CGCGGU---UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 83588 0.67 0.832124
Target:  5'- cCCGcGAGCCcgaGCaCGCGCGCgCGcGCAg-- -3'
miRNA:   3'- -GGC-CUCGG---UG-GCGCGCG-GUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 123465 0.67 0.832124
Target:  5'- cCCGGcgacGGCCGCCGCGgGCUc------- -3'
miRNA:   3'- -GGCC----UCGGUGGCGCgCGGuuuguauu -5'
6424 3' -56.3 NC_001847.1 + 18743 0.67 0.832124
Target:  5'- cCCGGGGCCcagagcGCCGC-CGCCGcGGC-UAAg -3'
miRNA:   3'- -GGCCUCGG------UGGCGcGCGGU-UUGuAUU- -5'
6424 3' -56.3 NC_001847.1 + 13118 0.67 0.832124
Target:  5'- gCCGGGGCgcgcgggcggCGCCGCGcCGCCugccGCGg-- -3'
miRNA:   3'- -GGCCUCG----------GUGGCGC-GCGGuu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 3457 0.67 0.829586
Target:  5'- gCGGAagucgacagcaagcGCgCGCCgGCGCGCCGAgagcucgcACAUGAg -3'
miRNA:   3'- gGCCU--------------CG-GUGG-CGCGCGGUU--------UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 54058 0.67 0.829586
Target:  5'- gCGGcgaGGCCGCCGCcaGCGCCGucgccgccuucgccGGCAa-- -3'
miRNA:   3'- gGCC---UCGGUGGCG--CGCGGU--------------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 105406 0.67 0.829586
Target:  5'- uCCGGuagccgucuacguuGGCCACCGCucccGCGCC--GCAg-- -3'
miRNA:   3'- -GGCC--------------UCGGUGGCG----CGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 85975 0.67 0.827032
Target:  5'- gCGGAcGCCcggcgcgugaccgugGuCCGCGCGCCGAugGg-- -3'
miRNA:   3'- gGCCU-CGG---------------U-GGCGCGCGGUUugUauu -5'
6424 3' -56.3 NC_001847.1 + 104757 0.67 0.823601
Target:  5'- cUCGG-GCCGCCgGCGCucguccucGCCGGGCGg-- -3'
miRNA:   3'- -GGCCuCGGUGG-CGCG--------CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134758 0.67 0.823601
Target:  5'- gUCGGAGCgcgguccggcgCGCgGCGCGCgGGGCGg-- -3'
miRNA:   3'- -GGCCUCG-----------GUGgCGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 132856 0.67 0.823601
Target:  5'- cCCGGcGGCC-CCGC-CGCCGAcgGCGg-- -3'
miRNA:   3'- -GGCC-UCGGuGGCGcGCGGUU--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 130611 0.67 0.823601
Target:  5'- cCCGcGGGCgGCCGC-CGCgAGGCAc-- -3'
miRNA:   3'- -GGC-CUCGgUGGCGcGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 41340 0.67 0.823601
Target:  5'- gCGGggacucGGCCGCCGCG-GCCGcGCGg-- -3'
miRNA:   3'- gGCC------UCGGUGGCGCgCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 93537 0.67 0.823601
Target:  5'- cCCGGAGCgC-CCGgguuaCGUGCCGAGCcgGc -3'
miRNA:   3'- -GGCCUCG-GuGGC-----GCGCGGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 79984 0.67 0.823601
Target:  5'- -gGcGAGCCGCUGCGCGgCGGugAc-- -3'
miRNA:   3'- ggC-CUCGGUGGCGCGCgGUUugUauu -5'
6424 3' -56.3 NC_001847.1 + 32378 0.67 0.823601
Target:  5'- gCCGGcGUCGCgggCGuCGCGCCuuGCGUGGg -3'
miRNA:   3'- -GGCCuCGGUG---GC-GCGCGGuuUGUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.