miRNA display CGI


Results 81 - 100 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 20271 0.68 0.739926
Target:  5'- aCGGcgaGGUCggcGCCGCGCGUCGgaAGCAUGAu -3'
miRNA:   3'- gGCC---UCGG---UGGCGCGCGGU--UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 21763 0.75 0.370117
Target:  5'- -gGGGGCCGCCG-GCGCCGGGCc--- -3'
miRNA:   3'- ggCCUCGGUGGCgCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 23067 0.68 0.739926
Target:  5'- gCCGGA-CCGCCGgGuCGCCGAgggcgcccucuACGUAGc -3'
miRNA:   3'- -GGCCUcGGUGGCgC-GCGGUU-----------UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 23880 0.66 0.848603
Target:  5'- cCCGGcGCCGCCuccgacccgGCGCcGCCuccgacccGACAUGAu -3'
miRNA:   3'- -GGCCuCGGUGG---------CGCG-CGGu-------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 24228 0.73 0.502951
Target:  5'- cUCGGcgaucuccacguucAGCCGCCGCGCGgCGGGCGa-- -3'
miRNA:   3'- -GGCC--------------UCGGUGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 25197 0.68 0.759436
Target:  5'- gCCaGcGAGCC-CCGCGCGCggccggcaaaGAGCAUGAu -3'
miRNA:   3'- -GG-C-CUCGGuGGCGCGCGg---------UUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 26880 0.69 0.709964
Target:  5'- gCGGccGCCACCGC-CGUCGGGCAa-- -3'
miRNA:   3'- gGCCu-CGGUGGCGcGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 27095 0.67 0.8149
Target:  5'- gCUGGAggcGUCGCCGagguCGCGCCAAGCc--- -3'
miRNA:   3'- -GGCCU---CGGUGGC----GCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 27292 0.73 0.496126
Target:  5'- gUCGGAGCCGCCGCcgguCGcCCGAGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCGc---GC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 27373 0.66 0.86428
Target:  5'- uCUGGAugGUUACCGuUGCGUCAGACAc-- -3'
miRNA:   3'- -GGCCU--CGGUGGC-GCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 27710 0.77 0.280894
Target:  5'- gCCGGcgGGCCGCC-CGCGCCGAGCu--- -3'
miRNA:   3'- -GGCC--UCGGUGGcGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 27802 0.73 0.505888
Target:  5'- gCgGGGGCCACCGaggGCGCCGAGg---- -3'
miRNA:   3'- -GgCCUCGGUGGCg--CGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 27999 0.66 0.8718
Target:  5'- gCGGAgGCgGCCGCG-GCCgAAGCGg-- -3'
miRNA:   3'- gGCCU-CGgUGGCGCgCGG-UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 28101 0.76 0.338344
Target:  5'- cCCGGGGCCGCgCGCGacacCGCCGAuuuCAUGg -3'
miRNA:   3'- -GGCCUCGGUG-GCGC----GCGGUUu--GUAUu -5'
6424 3' -56.3 NC_001847.1 + 28187 0.67 0.832124
Target:  5'- cCUGGcGGCCGCgcgccUGCGCGCCAcggcGGCGUu- -3'
miRNA:   3'- -GGCC-UCGGUG-----GCGCGCGGU----UUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 28335 0.69 0.678365
Target:  5'- cCCGGcGCCccgcgggGCCGCGCGcCCGGGCc--- -3'
miRNA:   3'- -GGCCuCGG-------UGGCGCGC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 28382 0.71 0.576204
Target:  5'- gCCGGAGacggcgccccccCCGCCGCGgCGCCAGcGCGg-- -3'
miRNA:   3'- -GGCCUC------------GGUGGCGC-GCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 28428 0.67 0.806029
Target:  5'- aCCGGcGCCcgcgcuggcuacGCCGCGgCGCCGcGCGa-- -3'
miRNA:   3'- -GGCCuCGG------------UGGCGC-GCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 28488 0.68 0.759436
Target:  5'- gCGGAcGCCGCgGCGCcGCCGcuAGCGc-- -3'
miRNA:   3'- gGCCU-CGGUGgCGCG-CGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 28518 0.66 0.86428
Target:  5'- cCCGGcAGCgCGCCGC-CGCCGcccggccGCGUGc -3'
miRNA:   3'- -GGCC-UCG-GUGGCGcGCGGUu------UGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.