miRNA display CGI


Results 121 - 140 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 30496 0.73 0.476864
Target:  5'- gCCGGGcGCUggACgGgCGCGCCGGACGUGAg -3'
miRNA:   3'- -GGCCU-CGG--UGgC-GCGCGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 30612 0.81 0.171233
Target:  5'- cCCGGGGCCGCCGCgcaGCGCCGcaAACGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCG---CGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 30761 0.66 0.8718
Target:  5'- aCCGcGGcCCGCUGCaGCGCCGcGCGUc- -3'
miRNA:   3'- -GGCcUC-GGUGGCG-CGCGGUuUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 30796 0.71 0.576204
Target:  5'- gCGGAcGCCGCCGCGUcuGCCGccgcGGCAa-- -3'
miRNA:   3'- gGCCU-CGGUGGCGCG--CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 30801 0.69 0.709964
Target:  5'- cCCGGGcGCCuuCgCGCGCGCCGAGg---- -3'
miRNA:   3'- -GGCCU-CGGu-G-GCGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 31012 0.67 0.823601
Target:  5'- uCCGGcguuGCCGgCGCGCGCgCGccGGCAa-- -3'
miRNA:   3'- -GGCCu---CGGUgGCGCGCG-GU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 31047 0.74 0.439504
Target:  5'- gCGGccAGCCACCGCGCcGCCAAcCGc-- -3'
miRNA:   3'- gGCC--UCGGUGGCGCG-CGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 31187 0.72 0.555816
Target:  5'- gCCGGAGCCGCgCGCcgagGCGCCGc------ -3'
miRNA:   3'- -GGCCUCGGUG-GCG----CGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 31233 0.68 0.758471
Target:  5'- gCGGcGCCgcccgcgGCCGCgGCGCCcGGCGUGGa -3'
miRNA:   3'- gGCCuCGG-------UGGCG-CGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 31462 0.7 0.658797
Target:  5'- gCGGGccGCCGCCGCGCGUgGAGg---- -3'
miRNA:   3'- gGCCU--CGGUGGCGCGCGgUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 31563 0.67 0.796997
Target:  5'- gCCGGcGCCGCCG-GCGgCGGGCcgGc -3'
miRNA:   3'- -GGCCuCGGUGGCgCGCgGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 31659 0.71 0.607074
Target:  5'- cCCGGAGC--CCGCGCGCCccgagGAGC-UAAg -3'
miRNA:   3'- -GGCCUCGguGGCGCGCGG-----UUUGuAUU- -5'
6424 3' -56.3 NC_001847.1 + 31737 0.68 0.787812
Target:  5'- gCGGAGCgGCCGCGgaggGCCAGGa---- -3'
miRNA:   3'- gGCCUCGgUGGCGCg---CGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 31768 0.66 0.867314
Target:  5'- gCCGGAGacgcggcgcuggcguCCGCCGCcacguuccccGCGUCGGGCAc-- -3'
miRNA:   3'- -GGCCUC---------------GGUGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 31945 0.67 0.823601
Target:  5'- gUCGGAGCgcgguccggcgCGCgGCGCGCgGGGCGg-- -3'
miRNA:   3'- -GGCCUCG-----------GUGgCGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 32072 0.7 0.638114
Target:  5'- cCCGGgcucgGGCCcCUGgGCGCCGGGCGUc- -3'
miRNA:   3'- -GGCC-----UCGGuGGCgCGCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 32114 0.67 0.806029
Target:  5'- cCCGGgcucgGGCCcCCGgGCGCCGggGGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGuGGCgCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 32138 0.71 0.596755
Target:  5'- gCUGGGcGCCGCCGCGC-CCGcGCAc-- -3'
miRNA:   3'- -GGCCU-CGGUGGCGCGcGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 32196 0.69 0.709964
Target:  5'- gCCGGGGCCcgaggcCCGCGgGCgGGGCcgGGg -3'
miRNA:   3'- -GGCCUCGGu-----GGCGCgCGgUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 32378 0.67 0.823601
Target:  5'- gCCGGcGUCGCgggCGuCGCGCCuuGCGUGGg -3'
miRNA:   3'- -GGCCuCGGUG---GC-GCGCGGuuUGUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.