miRNA display CGI


Results 141 - 160 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 32895 0.7 0.627761
Target:  5'- aCGGuGCgCGCCGCGCG-CGAGCGc-- -3'
miRNA:   3'- gGCCuCG-GUGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33004 0.74 0.430426
Target:  5'- gCCGGAGCgGCCgggggGCGCGCgGGGCGa-- -3'
miRNA:   3'- -GGCCUCGgUGG-----CGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33019 0.69 0.730022
Target:  5'- gCGGAguGCCGCCGCccucucCGCCGAGCu--- -3'
miRNA:   3'- gGCCU--CGGUGGCGc-----GCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 33518 0.75 0.361985
Target:  5'- gCGGGcGCCGCCGCggagGCGCCGGGCGc-- -3'
miRNA:   3'- gGCCU-CGGUGGCG----CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33794 0.69 0.720031
Target:  5'- gCGGGGCUGCgCGCGgCGCCcGGCGc-- -3'
miRNA:   3'- gGCCUCGGUG-GCGC-GCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33820 0.7 0.658797
Target:  5'- gCUGGAGCgGCUGUGCG-CAGACGc-- -3'
miRNA:   3'- -GGCCUCGgUGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33885 0.72 0.555816
Target:  5'- -aGGcGCCGCCGCGCGUggccgCGGGCGUGc -3'
miRNA:   3'- ggCCuCGGUGGCGCGCG-----GUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 33962 0.66 0.879101
Target:  5'- aCCcGAGCgCGCUG-GCGCCGGGCGc-- -3'
miRNA:   3'- -GGcCUCG-GUGGCgCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 34015 0.68 0.759436
Target:  5'- gCGGuGCugggCACCGCGCuggGCCAGGCGa-- -3'
miRNA:   3'- gGCCuCG----GUGGCGCG---CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 34117 0.69 0.679392
Target:  5'- gCGGAGCCugCG-GCGCCugccGCGg-- -3'
miRNA:   3'- gGCCUCGGugGCgCGCGGuu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 34317 0.75 0.370117
Target:  5'- gCCGGAGCCGCC-CGgGCCGAGg---- -3'
miRNA:   3'- -GGCCUCGGUGGcGCgCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 34390 0.73 0.467373
Target:  5'- aCGGcGGCCGCCGcCGCGgCAGACGc-- -3'
miRNA:   3'- gGCC-UCGGUGGC-GCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 34555 0.68 0.739926
Target:  5'- uUGGGGCCACagGC-CGCCAAGCu--- -3'
miRNA:   3'- gGCCUCGGUGg-CGcGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 34605 0.68 0.787812
Target:  5'- gCUGGcGCgGCgGCGCGCCGAGgAa-- -3'
miRNA:   3'- -GGCCuCGgUGgCGCGCGGUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 34631 0.75 0.370117
Target:  5'- uCCGGcGCCugCGCGCcgagGCCGAGCGg-- -3'
miRNA:   3'- -GGCCuCGGugGCGCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 34764 0.66 0.856545
Target:  5'- gCUGGcGCgGCUGCGCGCC--GCGg-- -3'
miRNA:   3'- -GGCCuCGgUGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 34806 0.66 0.856545
Target:  5'- cCCGcGGCCGCUgGCGCGgCAGGCcgAc -3'
miRNA:   3'- -GGCcUCGGUGG-CGCGCgGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 35213 0.66 0.848603
Target:  5'- gCUGGGcGCC-CUGCGCG-CGGACGUGc -3'
miRNA:   3'- -GGCCU-CGGuGGCGCGCgGUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 35453 0.71 0.596755
Target:  5'- aCGGcGGCCcgcGCCGCGCGCC--GCAa-- -3'
miRNA:   3'- gGCC-UCGG---UGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 35505 0.79 0.220312
Target:  5'- gCGGAgGCCACggCGCGCGCCGAGCGc-- -3'
miRNA:   3'- gGCCU-CGGUG--GCGCGCGGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.