miRNA display CGI


Results 161 - 180 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 35522 0.68 0.749734
Target:  5'- gCCGGGGCUuguauuuuuccGCCGgacugcagcccCGCGCCAAGCu--- -3'
miRNA:   3'- -GGCCUCGG-----------UGGC-----------GCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 35636 0.68 0.778484
Target:  5'- gCUGGGGCCagcgcuggACCGCGcCGCCucGGCGg-- -3'
miRNA:   3'- -GGCCUCGG--------UGGCGC-GCGGu-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 35829 0.68 0.778484
Target:  5'- gCGGAGCgCAUCGaCGCGCUgcGCGa-- -3'
miRNA:   3'- gGCCUCG-GUGGC-GCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 35936 0.67 0.832124
Target:  5'- gCGGcgcGCCGCCGCGCgGCCGc------ -3'
miRNA:   3'- gGCCu--CGGUGGCGCG-CGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 36098 0.68 0.759436
Target:  5'- gCGGAGCgCGgCGaCGCGCUggGCGc-- -3'
miRNA:   3'- gGCCUCG-GUgGC-GCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 36369 0.69 0.679392
Target:  5'- gCGGcGCCGCCGCG-GcCCGGGCAg-- -3'
miRNA:   3'- gGCCuCGGUGGCGCgC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 36550 0.66 0.876207
Target:  5'- uUCGGAGauugacgcgcuggCGCCGCGCGCCuaccuGGACGc-- -3'
miRNA:   3'- -GGCCUCg------------GUGGCGCGCGG-----UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 36612 0.72 0.515732
Target:  5'- aCCGGGuguGCUACCGCGCGgUggGCGa-- -3'
miRNA:   3'- -GGCCU---CGGUGGCGCGCgGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 36815 0.68 0.766159
Target:  5'- uUCGuGcGCCACCgGCGCGCCGacugggggcuggcgGACGUGc -3'
miRNA:   3'- -GGC-CuCGGUGG-CGCGCGGU--------------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 36942 0.68 0.749734
Target:  5'- cCCGGAGCU-CCGCG-GCCGucGCAc-- -3'
miRNA:   3'- -GGCCUCGGuGGCGCgCGGUu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 36981 0.66 0.848603
Target:  5'- gCCGGcgAGCgGgCC-CGCGCCGAGCGg-- -3'
miRNA:   3'- -GGCC--UCGgU-GGcGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 37313 0.71 0.617411
Target:  5'- gCGcAGCC-CgCGCGCGCCGAGCAc-- -3'
miRNA:   3'- gGCcUCGGuG-GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 37960 0.69 0.699828
Target:  5'- aCCGGuAGCCAUggcccgcgUGCGCGCCG-GCAg-- -3'
miRNA:   3'- -GGCC-UCGGUG--------GCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38024 0.66 0.846181
Target:  5'- gCGGGugcugugggcgcgcGCCGCCGCGcCGCCGcucGCAa-- -3'
miRNA:   3'- gGCCU--------------CGGUGGCGC-GCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 38052 0.66 0.8718
Target:  5'- aCCGc-GCCGCCGCG-GCUAAGCu--- -3'
miRNA:   3'- -GGCcuCGGUGGCGCgCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 38107 0.76 0.338344
Target:  5'- cCCGGAcGCCGCUGCccggcggguGCGCCGGGCAc-- -3'
miRNA:   3'- -GGCCU-CGGUGGCG---------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38216 0.72 0.525651
Target:  5'- gCGGAgGCCcggGCCGCGCGCCucuACGc-- -3'
miRNA:   3'- gGCCU-CGG---UGGCGCGCGGuu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 38331 0.67 0.8149
Target:  5'- gCGGucgccGCCGCUGCGCGCCccccGACc--- -3'
miRNA:   3'- gGCCu----CGGUGGCGCGCGGu---UUGuauu -5'
6424 3' -56.3 NC_001847.1 + 38577 0.66 0.8718
Target:  5'- gCCGGAGCCGCgGaggcuccugGCGUUGAGCGc-- -3'
miRNA:   3'- -GGCCUCGGUGgCg--------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38667 0.66 0.8718
Target:  5'- aCGGAGCCcUCGCGCaaGCUcAGCGa-- -3'
miRNA:   3'- gGCCUCGGuGGCGCG--CGGuUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.