miRNA display CGI


Results 61 - 80 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 123571 0.81 0.166902
Target:  5'- gCCGGGGCCGCCGCGagcgggGCCGGACcgGg -3'
miRNA:   3'- -GGCCUCGGUGGCGCg-----CGGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 123490 0.72 0.545699
Target:  5'- gCUGGGGCCGCCGCaaGCgGGGCcgGGg -3'
miRNA:   3'- -GGCCUCGGUGGCGcgCGgUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 123465 0.67 0.832124
Target:  5'- cCCGGcgacGGCCGCCGCGgGCUc------- -3'
miRNA:   3'- -GGCC----UCGGUGGCGCgCGGuuuguauu -5'
6424 3' -56.3 NC_001847.1 + 123035 0.67 0.8149
Target:  5'- uCCgGGGGCCgcuggaaguacgGCCGCggGCGCCGGACc--- -3'
miRNA:   3'- -GG-CCUCGG------------UGGCG--CGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 122779 0.66 0.86428
Target:  5'- gCCGcAGCCGCCGaCGCucccgaGCCAGGCc--- -3'
miRNA:   3'- -GGCcUCGGUGGC-GCG------CGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 122690 0.67 0.796997
Target:  5'- gCGGAGgcuCCGCCGCGCGCgCuguGCcgGc -3'
miRNA:   3'- gGCCUC---GGUGGCGCGCG-Guu-UGuaUu -5'
6424 3' -56.3 NC_001847.1 + 122387 0.68 0.787812
Target:  5'- aCGGccGGCgACUGCGCGCuCAuccGCAUAu -3'
miRNA:   3'- gGCC--UCGgUGGCGCGCG-GUu--UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 122315 0.69 0.680418
Target:  5'- aCCGGccaucucccaagcgcGCCGCuCGCGCGCCAcGCGc-- -3'
miRNA:   3'- -GGCCu--------------CGGUG-GCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 122268 0.66 0.8718
Target:  5'- uCCGGGuCCACCGUGCuCC--ACGUGGu -3'
miRNA:   3'- -GGCCUcGGUGGCGCGcGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 122026 0.69 0.709964
Target:  5'- gCGGcGCCGcCCGCGCGCCccggccgcGACAa-- -3'
miRNA:   3'- gGCCuCGGU-GGCGCGCGGu-------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 121915 0.68 0.749734
Target:  5'- cCCGcuGGCCAUCGCGgagcuCGCCGAGCGg-- -3'
miRNA:   3'- -GGCc-UCGGUGGCGC-----GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 121831 0.66 0.854184
Target:  5'- gCCGGAGCCcgucugccucgacgACCGCGaguGCUucaccGACGUGg -3'
miRNA:   3'- -GGCCUCGG--------------UGGCGCg--CGGu----UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 121754 0.76 0.338344
Target:  5'- cCCGGGcCCGCgGCGCGCCcGGACGUGc -3'
miRNA:   3'- -GGCCUcGGUGgCGCGCGG-UUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 120996 0.69 0.709964
Target:  5'- cCCGGccGCCGCUGCGCaGCCGgccggaGACAc-- -3'
miRNA:   3'- -GGCCu-CGGUGGCGCG-CGGU------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 120842 0.66 0.856545
Target:  5'- gCgGGAGCgggGCCGCGaCGCCGGAgAg-- -3'
miRNA:   3'- -GgCCUCGg--UGGCGC-GCGGUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 120703 0.69 0.679392
Target:  5'- gCGcGGCCGCgCGCucgGCGCCAAACAg-- -3'
miRNA:   3'- gGCcUCGGUG-GCG---CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 120683 0.67 0.8149
Target:  5'- cCCGGAGaCCcagagGCCGCG-GCCGcGCAc-- -3'
miRNA:   3'- -GGCCUC-GG-----UGGCGCgCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 120539 0.77 0.294494
Target:  5'- --cGAGCCgaugACCGCGCGCCAGACGg-- -3'
miRNA:   3'- ggcCUCGG----UGGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 119902 0.67 0.832124
Target:  5'- gCGuGGCCGCCGcCGCcGCCGGcGCGUAc -3'
miRNA:   3'- gGCcUCGGUGGC-GCG-CGGUU-UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 119568 0.66 0.848603
Target:  5'- --cGAGCCGCCGCcugcCGCCGAugGg-- -3'
miRNA:   3'- ggcCUCGGUGGCGc---GCGGUUugUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.