miRNA display CGI


Results 81 - 100 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 119390 0.68 0.739926
Target:  5'- gCGG-GCCGCC-CGCGUC-GGCAUAGg -3'
miRNA:   3'- gGCCuCGGUGGcGCGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 119217 0.68 0.778484
Target:  5'- gCCGcGGCCACCGCGgGgCGgcggggcaGGCAUGGg -3'
miRNA:   3'- -GGCcUCGGUGGCGCgCgGU--------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 119157 0.67 0.8149
Target:  5'- gCCGcGGCCGCCGCGgGgCGgcggggcaGGCAUGGg -3'
miRNA:   3'- -GGCcUCGGUGGCGCgCgGU--------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 119097 0.67 0.8149
Target:  5'- gCCGcGGCCGCCGCGgGgCGgcggggcaGGCAUGGg -3'
miRNA:   3'- -GGCcUCGGUGGCGCgCgGU--------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 118791 0.7 0.638114
Target:  5'- aCCGGcAGCCGCCaGCGCcuCCAGGCc--- -3'
miRNA:   3'- -GGCC-UCGGUGG-CGCGc-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 118515 0.66 0.84046
Target:  5'- aCGGcaaAGCCGCCGCGCccccccccaaaGaCCAcGCAUGu -3'
miRNA:   3'- gGCC---UCGGUGGCGCG-----------C-GGUuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 117483 0.68 0.749734
Target:  5'- aCCGcGAGCCGCCGaCGuCGUC-GACGUc- -3'
miRNA:   3'- -GGC-CUCGGUGGC-GC-GCGGuUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 117272 0.74 0.438591
Target:  5'- gCGGGGCCGCCGUuuuggggcgccccGCGCCcGACGa-- -3'
miRNA:   3'- gGCCUCGGUGGCG-------------CGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 117209 0.8 0.199377
Target:  5'- gCCGGAGCCGCCGUccGUGuCCGAGCAc-- -3'
miRNA:   3'- -GGCCUCGGUGGCG--CGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 116205 0.66 0.848603
Target:  5'- aCGGAcGCCGCgGCGgCGCUggaAGACAc-- -3'
miRNA:   3'- gGCCU-CGGUGgCGC-GCGG---UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 116149 0.69 0.730022
Target:  5'- -aGGGcGCCGcCCGUGCGCUAAACu--- -3'
miRNA:   3'- ggCCU-CGGU-GGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 115796 0.7 0.638114
Target:  5'- gCGGAGCCGcugcggcuCCGCGCGCU--GCGc-- -3'
miRNA:   3'- gGCCUCGGU--------GGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 115499 0.72 0.514744
Target:  5'- gCCGGgcccgcaAGCgGCCGCGCGCCGAcgccgGCGc-- -3'
miRNA:   3'- -GGCC-------UCGgUGGCGCGCGGUU-----UGUauu -5'
6424 3' -56.3 NC_001847.1 + 115077 0.67 0.823601
Target:  5'- gCgGGAGCCGCCaCGCcGCucccgCAAACGUAc -3'
miRNA:   3'- -GgCCUCGGUGGcGCG-CG-----GUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 115005 0.69 0.699828
Target:  5'- aUCGG-GCCgagcuucguucGCCGCGCGCCAugagGGCGg-- -3'
miRNA:   3'- -GGCCuCGG-----------UGGCGCGCGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 114758 0.69 0.709964
Target:  5'- aCCGGugAGCCACCGCgagcGUGCUAAcGCAa-- -3'
miRNA:   3'- -GGCC--UCGGUGGCG----CGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 114113 0.7 0.638114
Target:  5'- cUCGGGGCaagcuugcuCGCaCGCGCGCUcgGCGUGAg -3'
miRNA:   3'- -GGCCUCG---------GUG-GCGCGCGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 113965 0.67 0.823601
Target:  5'- gCCGGGcgcGUCGCCGCagaaGCGCUccagGAGCGUAu -3'
miRNA:   3'- -GGCCU---CGGUGGCG----CGCGG----UUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 113514 0.69 0.689635
Target:  5'- cCCGGGcGCgGcCCGCGCcgGCCAAGCGc-- -3'
miRNA:   3'- -GGCCU-CGgU-GGCGCG--CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 113393 0.7 0.648462
Target:  5'- gCCGGcGGCCcccCCGCGCGCgCGGGCcgGc -3'
miRNA:   3'- -GGCC-UCGGu--GGCGCGCG-GUUUGuaUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.