miRNA display CGI


Results 101 - 120 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 113182 0.67 0.796997
Target:  5'- aCCGGcGCCGCgGCccaGCGcCCGGACGa-- -3'
miRNA:   3'- -GGCCuCGGUGgCG---CGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 113046 0.66 0.856545
Target:  5'- gCCGGcagcAGCCGCaGCGCGUCGGcGCAc-- -3'
miRNA:   3'- -GGCC----UCGGUGgCGCGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 112998 0.66 0.86275
Target:  5'- gCCGGcuuuugcgcgccGCCGCCGC-CGCCGGGCc--- -3'
miRNA:   3'- -GGCCu-----------CGGUGGCGcGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 112401 0.66 0.879101
Target:  5'- uUGGuuGCgCGCCGCGCGgCAGuCAUAu -3'
miRNA:   3'- gGCCu-CG-GUGGCGCGCgGUUuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 112332 0.68 0.739926
Target:  5'- -gGGAGCgGCCGC-CGCCGGcccGCAUc- -3'
miRNA:   3'- ggCCUCGgUGGCGcGCGGUU---UGUAuu -5'
6424 3' -56.3 NC_001847.1 + 111648 0.75 0.378372
Target:  5'- uCUGGGuGCCACCuguagcgacGCGCGCCGAGCGc-- -3'
miRNA:   3'- -GGCCU-CGGUGG---------CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 111347 0.68 0.73894
Target:  5'- gUCGGuGGCCGCCGCgcugggcgaccucGCGcCCGGGCAUc- -3'
miRNA:   3'- -GGCC-UCGGUGGCG-------------CGC-GGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 111312 0.7 0.66911
Target:  5'- cUCGGGGCCgugCGCGCGCUGGACc--- -3'
miRNA:   3'- -GGCCUCGGug-GCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 110823 0.67 0.796997
Target:  5'- gUGGcgcGCCACCGCuCGCUggGCAUc- -3'
miRNA:   3'- gGCCu--CGGUGGCGcGCGGuuUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 109904 0.66 0.879101
Target:  5'- aCCGGcAGCUcguuguccCCGCGaCGCCGAuCAUGc -3'
miRNA:   3'- -GGCC-UCGGu-------GGCGC-GCGGUUuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 109616 0.79 0.220312
Target:  5'- gCGGAGCCGgUGCGCGCCAAccGCGc-- -3'
miRNA:   3'- gGCCUCGGUgGCGCGCGGUU--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 109164 0.71 0.617411
Target:  5'- gCCaGAGCCgGCCGCGCGCUuguucccaAGGCGUc- -3'
miRNA:   3'- -GGcCUCGG-UGGCGCGCGG--------UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 108796 0.66 0.854184
Target:  5'- cCCGGGagagcugcauguacGCCGCCuucGCGCGCCugggGACGc-- -3'
miRNA:   3'- -GGCCU--------------CGGUGG---CGCGCGGu---UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 108462 0.69 0.720031
Target:  5'- gCUGGAGcCCGCCG-GCGUCAAAUuuGUGu -3'
miRNA:   3'- -GGCCUC-GGUGGCgCGCGGUUUG--UAUu -5'
6424 3' -56.3 NC_001847.1 + 108126 0.69 0.699828
Target:  5'- uCUGGcAGCCGCCuGCGCcGCCGAguACGg-- -3'
miRNA:   3'- -GGCC-UCGGUGG-CGCG-CGGUU--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 107596 0.69 0.699828
Target:  5'- gCGGcucccAGCCGCCGCGcCGCCGuucucgGGCGUc- -3'
miRNA:   3'- gGCC-----UCGGUGGCGC-GCGGU------UUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 107140 0.66 0.86428
Target:  5'- gCGcGGCaCGCCGCGCGCU--GCAg-- -3'
miRNA:   3'- gGCcUCG-GUGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 106936 0.7 0.658797
Target:  5'- aCCGGGccgaacGCCGCCGUGgCGCgCAGGCGc-- -3'
miRNA:   3'- -GGCCU------CGGUGGCGC-GCG-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 106803 0.66 0.8718
Target:  5'- cCCGGgcgcgcGGCC-CCGCgggGCGCCGGGCc--- -3'
miRNA:   3'- -GGCC------UCGGuGGCG---CGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 106520 0.68 0.787812
Target:  5'- gCCGcGGGCC-CCGCG-GCCGccGCGUAGc -3'
miRNA:   3'- -GGC-CUCGGuGGCGCgCGGUu-UGUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.