miRNA display CGI


Results 121 - 140 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 106292 0.68 0.778484
Target:  5'- gCCGGcGUCGCgCGCGCGgCCGcGCGUu- -3'
miRNA:   3'- -GGCCuCGGUG-GCGCGC-GGUuUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 106033 0.67 0.806029
Target:  5'- gCGcAGCCGCuCGCGCGCCGcccGCGc-- -3'
miRNA:   3'- gGCcUCGGUG-GCGCGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 105878 0.7 0.658797
Target:  5'- uCCGGGugcGCCGCCaGCGCGUCcGGCGc-- -3'
miRNA:   3'- -GGCCU---CGGUGG-CGCGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 105810 0.73 0.505888
Target:  5'- gCUGGAGCCgcgcgcgcuccACCGCgucgcgggccGCGCCGAGCAg-- -3'
miRNA:   3'- -GGCCUCGG-----------UGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 105730 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 105695 0.66 0.84046
Target:  5'- gCGGGccGCCgcGCCGCGCGUCGAGu---- -3'
miRNA:   3'- gGCCU--CGG--UGGCGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 105406 0.67 0.829586
Target:  5'- uCCGGuagccgucuacguuGGCCACCGCucccGCGCC--GCAg-- -3'
miRNA:   3'- -GGCC--------------UCGGUGGCG----CGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 105255 0.66 0.879101
Target:  5'- gCCGGcagGGCCGCCGCcuCGCCGu------ -3'
miRNA:   3'- -GGCC---UCGGUGGCGc-GCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 105111 0.71 0.607074
Target:  5'- gCGGGGCCGCCGgGCGgCAugggccccAGCAc-- -3'
miRNA:   3'- gGCCUCGGUGGCgCGCgGU--------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104997 0.71 0.607074
Target:  5'- cCCaGGGCgCACgGCGCGCCGcGCGUc- -3'
miRNA:   3'- -GGcCUCG-GUGgCGCGCGGUuUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 104757 0.67 0.823601
Target:  5'- cUCGG-GCCGCCgGCGCucguccucGCCGGGCGg-- -3'
miRNA:   3'- -GGCCuCGGUGG-CGCG--------CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104745 0.67 0.806029
Target:  5'- gCCGGcGGCCAgCGCcaGCGCCGucuGCGc-- -3'
miRNA:   3'- -GGCC-UCGGUgGCG--CGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 104716 0.66 0.848603
Target:  5'- cCCGGcGCCuCCGCGCccGCCAcgAGCu--- -3'
miRNA:   3'- -GGCCuCGGuGGCGCG--CGGU--UUGuauu -5'
6424 3' -56.3 NC_001847.1 + 104605 0.66 0.847798
Target:  5'- gUCGaGAGCagcagcaCGCCcuGCGCGCCGAGCGc-- -3'
miRNA:   3'- -GGC-CUCG-------GUGG--CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104548 0.68 0.739926
Target:  5'- gCCGcGGCCAgCCGCGCG-CAGAgGUAc -3'
miRNA:   3'- -GGCcUCGGU-GGCGCGCgGUUUgUAUu -5'
6424 3' -56.3 NC_001847.1 + 104485 0.66 0.86428
Target:  5'- gCCGG-GCCGUCGCGCgGCCAGu----- -3'
miRNA:   3'- -GGCCuCGGUGGCGCG-CGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 104316 0.66 0.856545
Target:  5'- cUCGGGGUagaGCCGCGCG-UAGGCGg-- -3'
miRNA:   3'- -GGCCUCGg--UGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104189 0.68 0.739926
Target:  5'- -aGGGGgCACCGCGCGCgcAGCGc-- -3'
miRNA:   3'- ggCCUCgGUGGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104118 0.71 0.606041
Target:  5'- gCCGGcguuGCCGgCGCGCgcgcgccggcaacGCCGGACAUGGu -3'
miRNA:   3'- -GGCCu---CGGUgGCGCG-------------CGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 104065 0.68 0.749734
Target:  5'- aCCGGccGCaGCgGCGCGCCGAGCc--- -3'
miRNA:   3'- -GGCCu-CGgUGgCGCGCGGUUUGuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.