miRNA display CGI


Results 141 - 160 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 104040 0.66 0.856545
Target:  5'- -aGGcauGCCACCGCGCuGCCcGGCc--- -3'
miRNA:   3'- ggCCu--CGGUGGCGCG-CGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 103925 0.68 0.739926
Target:  5'- gCGGcGCCGCCGCG-GCCuccAGCAc-- -3'
miRNA:   3'- gGCCuCGGUGGCGCgCGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 103831 0.66 0.8718
Target:  5'- aCCaGGccGCCGCCcgcgGCGCGCCGcAGCAg-- -3'
miRNA:   3'- -GG-CCu-CGGUGG----CGCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 103707 0.78 0.2552
Target:  5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 103544 0.69 0.709964
Target:  5'- aCCGGgacucgggcuGGCCACaCGCGCGCaGAGCu--- -3'
miRNA:   3'- -GGCC----------UCGGUG-GCGCGCGgUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 103309 0.8 0.189574
Target:  5'- gCGGGGCgGCCGCGCGCCAAc----- -3'
miRNA:   3'- gGCCUCGgUGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 103184 0.7 0.627761
Target:  5'- aCGGGGcCCGCCGC-CGCCGcGGCAg-- -3'
miRNA:   3'- gGCCUC-GGUGGCGcGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 103179 0.84 0.112833
Target:  5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3'
miRNA:   3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 103135 0.67 0.8149
Target:  5'- gCGcGGGCCGCCgGCGCGCgAAGg---- -3'
miRNA:   3'- gGC-CUCGGUGG-CGCGCGgUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 102952 0.73 0.467373
Target:  5'- gCGGuaaccuccGCCGCgCGCGCGCCAAGCu--- -3'
miRNA:   3'- gGCCu-------CGGUG-GCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 102053 0.67 0.806029
Target:  5'- gCGcGAGCgcugUACUGCGCGCCGcGCAg-- -3'
miRNA:   3'- gGC-CUCG----GUGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101940 0.68 0.739926
Target:  5'- gCC-GAGCCAcCCGCGCcGCCAAGuCGg-- -3'
miRNA:   3'- -GGcCUCGGU-GGCGCG-CGGUUU-GUauu -5'
6424 3' -56.3 NC_001847.1 + 101907 0.73 0.457981
Target:  5'- gCGGAGgCGCCGCGgCGCCcGGCGc-- -3'
miRNA:   3'- gGCCUCgGUGGCGC-GCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101557 0.7 0.648462
Target:  5'- uCCGcaGGCCGCCGagcccgggcCGCGCCAGACGc-- -3'
miRNA:   3'- -GGCc-UCGGUGGC---------GCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101519 0.7 0.648462
Target:  5'- gCGGucAGCCGCCGCGCccgucGCCAGgGCGUc- -3'
miRNA:   3'- gGCC--UCGGUGGCGCG-----CGGUU-UGUAuu -5'
6424 3' -56.3 NC_001847.1 + 101455 0.71 0.607074
Target:  5'- gCGGAaacuGCCGCCGCGCgGCCGcaagGGCGg-- -3'
miRNA:   3'- gGCCU----CGGUGGCGCG-CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101383 0.66 0.84046
Target:  5'- gCgGGGGCUGcCCGCGgCGCCGccGGCAa-- -3'
miRNA:   3'- -GgCCUCGGU-GGCGC-GCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101355 0.66 0.86428
Target:  5'- cUCGGGGCUGCaUGCGCGCgCuuGCGc-- -3'
miRNA:   3'- -GGCCUCGGUG-GCGCGCG-GuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101331 0.67 0.823601
Target:  5'- gCGcacAGCCGCUccaGCGCGCCGGGCGc-- -3'
miRNA:   3'- gGCc--UCGGUGG---CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101071 0.76 0.330717
Target:  5'- cCCGGGGCCGCCGCGgggGCCGggUcgGc -3'
miRNA:   3'- -GGCCUCGGUGGCGCg--CGGUuuGuaUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.