miRNA display CGI


Results 161 - 180 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 101064 0.69 0.689635
Target:  5'- aCGGcGGCCGCCaCGCGCUccGCGUGc -3'
miRNA:   3'- gGCC-UCGGUGGcGCGCGGuuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 101016 0.68 0.769022
Target:  5'- gCGGcGGCCACCGCggcagGCGCC--GCAg-- -3'
miRNA:   3'- gGCC-UCGGUGGCG-----CGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 100872 0.76 0.315845
Target:  5'- gCGGcgcccAGCCGCCGCGCGCCGGucuGCGc-- -3'
miRNA:   3'- gGCC-----UCGGUGGCGCGCGGUU---UGUauu -5'
6424 3' -56.3 NC_001847.1 + 100692 0.7 0.627761
Target:  5'- gCCGGcGGCCACCGCG-GCCu--CGUc- -3'
miRNA:   3'- -GGCC-UCGGUGGCGCgCGGuuuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 100552 0.7 0.638114
Target:  5'- -gGGAGCCgGCCGCGgcgauuauugcCGCCAGGCGc-- -3'
miRNA:   3'- ggCCUCGG-UGGCGC-----------GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 100532 0.68 0.778484
Target:  5'- gCCGGAcuuccucggcgcGCCGCCGCGCcagcgcccggGCCuuGCGc-- -3'
miRNA:   3'- -GGCCU------------CGGUGGCGCG----------CGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 100355 0.68 0.769022
Target:  5'- gCCGcGGGUCguaGCCGCGCGCC--GCGg-- -3'
miRNA:   3'- -GGC-CUCGG---UGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 100331 0.66 0.8718
Target:  5'- cCCGGucGGCCugC-CGCGCCAGc----- -3'
miRNA:   3'- -GGCC--UCGGugGcGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 99814 0.66 0.856545
Target:  5'- gUCGGAGCgGCCGgGgGCCGc------ -3'
miRNA:   3'- -GGCCUCGgUGGCgCgCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 99761 0.66 0.84046
Target:  5'- cCCGGcagugAGCCGCCGCG-GCUuuGGGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGCgCGG--UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 99621 0.67 0.796997
Target:  5'- uCCGGcggaaaaauacaAGCC-CCgGCGCgcacGCCGAGCAUAAc -3'
miRNA:   3'- -GGCC------------UCGGuGG-CGCG----CGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 99572 0.66 0.847798
Target:  5'- gCCGGcGCCGCuccaaagCGCGCacGCCAAGCu--- -3'
miRNA:   3'- -GGCCuCGGUG-------GCGCG--CGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 99511 0.66 0.881958
Target:  5'- cCUGGAGUuugcgccgagccccgCGCCGCGCGCUuu-CGUu- -3'
miRNA:   3'- -GGCCUCG---------------GUGGCGCGCGGuuuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 99427 0.68 0.749734
Target:  5'- gCGGuAGCCGCauaCGCuGCGCCA-GCGUGGg -3'
miRNA:   3'- gGCC-UCGGUG---GCG-CGCGGUuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 99180 0.7 0.648462
Target:  5'- gCgGGAGCCACaGCaGCGCCGccAGCAg-- -3'
miRNA:   3'- -GgCCUCGGUGgCG-CGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 99071 0.68 0.786886
Target:  5'- cCCGGGGCCGCCucuuCGUGCUggggccugucugcGAGCAa-- -3'
miRNA:   3'- -GGCCUCGGUGGc---GCGCGG-------------UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 98779 0.71 0.607074
Target:  5'- cCCGG-GCCGCgGCGgCGCC--GCGUGg -3'
miRNA:   3'- -GGCCuCGGUGgCGC-GCGGuuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 98738 0.66 0.86428
Target:  5'- gCCGGGGCCgggGCCGgG-GCCgGGGCAUc- -3'
miRNA:   3'- -GGCCUCGG---UGGCgCgCGG-UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 98690 0.66 0.86428
Target:  5'- gCCGGGGCCgaaGCCG-GgGCCGAAg---- -3'
miRNA:   3'- -GGCCUCGG---UGGCgCgCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 98666 0.66 0.86428
Target:  5'- gCCGGGGCCgaaGCCG-GgGCCGAAg---- -3'
miRNA:   3'- -GGCCUCGG---UGGCgCgCGGUUUguauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.