miRNA display CGI


Results 61 - 80 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 43454 0.73 0.467373
Target:  5'- cCCGGGGCgACgGCGCggucGCCGAGCGc-- -3'
miRNA:   3'- -GGCCUCGgUGgCGCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 130105 0.73 0.496126
Target:  5'- gUCGGAGCCGCCGCcgguCGcCCGAGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCGc---GC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 35505 0.79 0.220312
Target:  5'- gCGGAgGCCACggCGCGCGCCGAGCGc-- -3'
miRNA:   3'- gGCCU-CGGUG--GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81121 0.78 0.261438
Target:  5'- uCCaGAGCgCGCCGCGCGUCGGACcgGAc -3'
miRNA:   3'- -GGcCUCG-GUGGCGCGCGGUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 1864 0.77 0.3086
Target:  5'- gCCGGAGCgCACCGCGCgGCuUAGACGc-- -3'
miRNA:   3'- -GGCCUCG-GUGGCGCG-CG-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 28101 0.76 0.338344
Target:  5'- cCCGGGGCCGCgCGCGacacCGCCGAuuuCAUGg -3'
miRNA:   3'- -GGCCUCGGUG-GCGC----GCGGUUu--GUAUu -5'
6424 3' -56.3 NC_001847.1 + 34631 0.75 0.370117
Target:  5'- uCCGGcGCCugCGCGCcgagGCCGAGCGg-- -3'
miRNA:   3'- -GGCCuCGGugGCGCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 95300 0.75 0.39525
Target:  5'- aCCGGcGGCUGgCGCGCGCCAcGCAg-- -3'
miRNA:   3'- -GGCC-UCGGUgGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 45505 0.74 0.412607
Target:  5'- cCCGGGGCgggCGCCGC-CGCCGGGCGg-- -3'
miRNA:   3'- -GGCCUCG---GUGGCGcGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 133860 0.74 0.439504
Target:  5'- gCGGccAGCCACCGCGCcGCCAAcCGc-- -3'
miRNA:   3'- gGCC--UCGGUGGCGCG-CGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 131416 0.71 0.617411
Target:  5'- uCCGcGAgGCgGCCGCGCGCUAcGCGg-- -3'
miRNA:   3'- -GGC-CU-CGgUGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 31659 0.71 0.607074
Target:  5'- cCCGGAGC--CCGCGCGCCccgagGAGC-UAAg -3'
miRNA:   3'- -GGCCUCGguGGCGCGCGG-----UUUGuAUU- -5'
6424 3' -56.3 NC_001847.1 + 48154 0.73 0.505888
Target:  5'- gCCGG-GCCGgCGCGCGCCGGc----- -3'
miRNA:   3'- -GGCCuCGGUgGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 19351 0.72 0.535642
Target:  5'- gCCGGGuCUugCGCGCGCCcGACGg-- -3'
miRNA:   3'- -GGCCUcGGugGCGCGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 105730 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 19398 0.71 0.564967
Target:  5'- gCCGGugugugugcccauGGCCACCaGCGCGCCcguGGCGg-- -3'
miRNA:   3'- -GGCC-------------UCGGUGG-CGCGCGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 57100 0.71 0.576204
Target:  5'- gCUGGA-CCGCCGCGCcGCCGcgcGCAUGu -3'
miRNA:   3'- -GGCCUcGGUGGCGCG-CGGUu--UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 84233 0.71 0.586462
Target:  5'- gCCGGGGCCGCCGCgggggaggaggGCGgCGagGACAa-- -3'
miRNA:   3'- -GGCCUCGGUGGCG-----------CGCgGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 53267 0.71 0.596755
Target:  5'- gCGGGG-CGCUGCGCGcCCAGGCGc-- -3'
miRNA:   3'- gGCCUCgGUGGCGCGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 42397 0.71 0.606041
Target:  5'- gCGGAGCCGCauguucgCGCGCGCUGacGACGg-- -3'
miRNA:   3'- gGCCUCGGUG-------GCGCGCGGU--UUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.