miRNA display CGI


Results 81 - 100 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 42994 0.72 0.515732
Target:  5'- gCCGGGaacGCCGCCggggggGCGCGCCGGGCc--- -3'
miRNA:   3'- -GGCCU---CGGUGG------CGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 33885 0.72 0.555816
Target:  5'- -aGGcGCCGCCGCGCGUggccgCGGGCGUGc -3'
miRNA:   3'- ggCCuCGGUGGCGCGCG-----GUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 134000 0.72 0.555816
Target:  5'- gCCGGAGCCGCgCGCcgagGCGCCGc------ -3'
miRNA:   3'- -GGCCUCGGUG-GCG----CGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 1103 0.71 0.576204
Target:  5'- uCUGGAGaCGCCGCGUGCCccuGCGa-- -3'
miRNA:   3'- -GGCCUCgGUGGCGCGCGGuu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 84631 0.71 0.576204
Target:  5'- gCGGGGCCaugccgcggcuGCUGCGCGCuCGGGCGa-- -3'
miRNA:   3'- gGCCUCGG-----------UGGCGCGCG-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 53267 0.71 0.596755
Target:  5'- gCGGGG-CGCUGCGCGcCCAGGCGc-- -3'
miRNA:   3'- gGCCUCgGUGGCGCGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 42397 0.71 0.606041
Target:  5'- gCGGAGCCGCauguucgCGCGCGCUGacGACGg-- -3'
miRNA:   3'- gGCCUCGGUG-------GCGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 133860 0.74 0.439504
Target:  5'- gCGGccAGCCACCGCGCcGCCAAcCGc-- -3'
miRNA:   3'- gGCC--UCGGUGGCGCG-CGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 45505 0.74 0.412607
Target:  5'- cCCGGGGCgggCGCCGC-CGCCGGGCGg-- -3'
miRNA:   3'- -GGCCUCG---GUGGCGcGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 95300 0.75 0.39525
Target:  5'- aCCGGcGGCUGgCGCGCGCCAcGCAg-- -3'
miRNA:   3'- -GGCC-UCGGUgGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 100552 0.7 0.638114
Target:  5'- -gGGAGCCgGCCGCGgcgauuauugcCGCCAGGCGc-- -3'
miRNA:   3'- ggCCUCGG-UGGCGC-----------GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 79069 0.7 0.638114
Target:  5'- gCCGGAGCCgGgCGCGUGC--GACGUGu -3'
miRNA:   3'- -GGCCUCGG-UgGCGCGCGguUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 46773 0.7 0.648462
Target:  5'- gCGGGGCCGguccgccgcgcCCGCGCGCCccuCGUu- -3'
miRNA:   3'- gGCCUCGGU-----------GGCGCGCGGuuuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 65429 0.7 0.648462
Target:  5'- uCCGGgaggcGGCaGCCGCGCGCCGcgGACcgAGc -3'
miRNA:   3'- -GGCC-----UCGgUGGCGCGCGGU--UUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 134275 0.7 0.658797
Target:  5'- gCGGGccGCCGCCGCGCGUgGAGg---- -3'
miRNA:   3'- gGCCU--CGGUGGCGCGCGgUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 35505 0.79 0.220312
Target:  5'- gCGGAgGCCACggCGCGCGCCGAGCGc-- -3'
miRNA:   3'- gGCCU-CGGUG--GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81121 0.78 0.261438
Target:  5'- uCCaGAGCgCGCCGCGCGUCGGACcgGAc -3'
miRNA:   3'- -GGcCUCG-GUGGCGCGCGGUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 1864 0.77 0.3086
Target:  5'- gCCGGAGCgCACCGCGCgGCuUAGACGc-- -3'
miRNA:   3'- -GGCCUCG-GUGGCGCG-CG-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 28101 0.76 0.338344
Target:  5'- cCCGGGGCCGCgCGCGacacCGCCGAuuuCAUGg -3'
miRNA:   3'- -GGCCUCGGUG-GCGC----GCGGUUu--GUAUu -5'
6424 3' -56.3 NC_001847.1 + 34631 0.75 0.370117
Target:  5'- uCCGGcGCCugCGCGCcgagGCCGAGCGg-- -3'
miRNA:   3'- -GGCCuCGGugGCGCG----CGGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.