miRNA display CGI


Results 121 - 140 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 86670 0.75 0.370117
Target:  5'- cUCGGAGCuCGCCGCGCGCUuuuGCc--- -3'
miRNA:   3'- -GGCCUCG-GUGGCGCGCGGuu-UGuauu -5'
6424 3' -56.3 NC_001847.1 + 29032 0.74 0.403869
Target:  5'- cCCaGAGCCG-CGCGCGCCGgcaGACGUGc -3'
miRNA:   3'- -GGcCUCGGUgGCGCGCGGU---UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 36369 0.69 0.679392
Target:  5'- gCGGcGCCGCCGCG-GcCCGGGCAg-- -3'
miRNA:   3'- gGCCuCGGUGGCGCgC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 105878 0.7 0.658797
Target:  5'- uCCGGGugcGCCGCCaGCGCGUCcGGCGc-- -3'
miRNA:   3'- -GGCCU---CGGUGG-CGCGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 90097 0.7 0.658797
Target:  5'- -gGGAcGCCACCGCgggggGCGCUGAGgGUGAg -3'
miRNA:   3'- ggCCU-CGGUGGCG-----CGCGGUUUgUAUU- -5'
6424 3' -56.3 NC_001847.1 + 53020 0.73 0.48645
Target:  5'- gCGGcGGCCGCUGCGCGCuCGGGCc--- -3'
miRNA:   3'- gGCC-UCGGUGGCGCGCG-GUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 24228 0.73 0.502951
Target:  5'- cUCGGcgaucuccacguucAGCCGCCGCGCGgCGGGCGa-- -3'
miRNA:   3'- -GGCC--------------UCGGUGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 48154 0.73 0.505888
Target:  5'- gCCGG-GCCGgCGCGCGCCGGc----- -3'
miRNA:   3'- -GGCCuCGGUgGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 69749 0.72 0.545699
Target:  5'- gUGGccuGCCACCGCGCGCUGuuCAg-- -3'
miRNA:   3'- gGCCu--CGGUGGCGCGCGGUuuGUauu -5'
6424 3' -56.3 NC_001847.1 + 105730 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 76854 0.71 0.565986
Target:  5'- gCCGGccGCCGCCGuCGCcgcgGCCGAGCAc-- -3'
miRNA:   3'- -GGCCu-CGGUGGC-GCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 57100 0.71 0.576204
Target:  5'- gCUGGA-CCGCCGCGCcGCCGcgcGCAUGu -3'
miRNA:   3'- -GGCCUcGGUGGCGCG-CGGUu--UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 32138 0.71 0.596755
Target:  5'- gCUGGGcGCCGCCGCGC-CCGcGCAc-- -3'
miRNA:   3'- -GGCCU-CGGUGGCGCGcGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 53267 0.71 0.596755
Target:  5'- gCGGGG-CGCUGCGCGcCCAGGCGc-- -3'
miRNA:   3'- gGCCUCgGUGGCGCGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101455 0.71 0.607074
Target:  5'- gCGGAaacuGCCGCCGCGCgGCCGcaagGGCGg-- -3'
miRNA:   3'- gGCCU----CGGUGGCGCG-CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 31659 0.71 0.607074
Target:  5'- cCCGGAGC--CCGCGCGCCccgagGAGC-UAAg -3'
miRNA:   3'- -GGCCUCGguGGCGCGCGG-----UUUGuAUU- -5'
6424 3' -56.3 NC_001847.1 + 68935 0.7 0.638114
Target:  5'- gCCcGAGCCGCCGCugggcgGCGCCGAuGCGg-- -3'
miRNA:   3'- -GGcCUCGGUGGCG------CGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 132813 0.7 0.638114
Target:  5'- gCgGGAGCCGCCGCugccCGCCc-GCGUGc -3'
miRNA:   3'- -GgCCUCGGUGGCGc---GCGGuuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 114113 0.7 0.638114
Target:  5'- cUCGGGGCaagcuugcuCGCaCGCGCGCUcgGCGUGAg -3'
miRNA:   3'- -GGCCUCG---------GUG-GCGCGCGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 99180 0.7 0.648462
Target:  5'- gCgGGAGCCACaGCaGCGCCGccAGCAg-- -3'
miRNA:   3'- -GgCCUCGGUGgCG-CGCGGU--UUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.