miRNA display CGI


Results 141 - 160 of 611 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 28737 0.68 0.759436
Target:  5'- gCGGGcagcGUCGCCGCGCGCgu-GCGUGc -3'
miRNA:   3'- gGCCU----CGGUGGCGCGCGguuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 25197 0.68 0.759436
Target:  5'- gCCaGcGAGCC-CCGCGCGCggccggcaaaGAGCAUGAu -3'
miRNA:   3'- -GG-C-CUCGGuGGCGCGCGg---------UUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 51542 0.69 0.679392
Target:  5'- gUCGGAGgCugCGCGCGCgc-GCGUGc -3'
miRNA:   3'- -GGCCUCgGugGCGCGCGguuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 82554 0.7 0.66911
Target:  5'- aCCGaAGCgCACCGCGCGCgGuACAc-- -3'
miRNA:   3'- -GGCcUCG-GUGGCGCGCGgUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 65429 0.7 0.648462
Target:  5'- uCCGGgaggcGGCaGCCGCGCGCCGcgGACcgAGc -3'
miRNA:   3'- -GGCC-----UCGgUGGCGCGCGGU--UUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 99180 0.7 0.648462
Target:  5'- gCgGGAGCCACaGCaGCGCCGccAGCAg-- -3'
miRNA:   3'- -GgCCUCGGUGgCG-CGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 79069 0.7 0.638114
Target:  5'- gCCGGAGCCgGgCGCGUGC--GACGUGu -3'
miRNA:   3'- -GGCCUCGG-UgGCGCGCGguUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 132813 0.7 0.638114
Target:  5'- gCgGGAGCCGCCGCugccCGCCc-GCGUGc -3'
miRNA:   3'- -GgCCUCGGUGGCGc---GCGGuuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 87689 0.7 0.627761
Target:  5'- gCUGGGGCUGCUGCGgCGCCGcGGCGg-- -3'
miRNA:   3'- -GGCCUCGGUGGCGC-GCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 97458 0.71 0.617411
Target:  5'- gCCGcAGCCgcgccaggGCCGCGCGCUAAGCc--- -3'
miRNA:   3'- -GGCcUCGG--------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 84823 0.69 0.689635
Target:  5'- cCCgGGGGCCugCGUGCGCaCAAccccccGCAg-- -3'
miRNA:   3'- -GG-CCUCGGugGCGCGCG-GUU------UGUauu -5'
6424 3' -56.3 NC_001847.1 + 29618 0.69 0.699828
Target:  5'- uUCGccGCCGCCGUGCuGUCGGACGUGc -3'
miRNA:   3'- -GGCcuCGGUGGCGCG-CGGUUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 117483 0.68 0.749734
Target:  5'- aCCGcGAGCCGCCGaCGuCGUC-GACGUc- -3'
miRNA:   3'- -GGC-CUCGGUGGC-GC-GCGGuUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 75324 0.68 0.749734
Target:  5'- -gGGuaGGCCACCGCGCucCCGGGCGg-- -3'
miRNA:   3'- ggCC--UCGGUGGCGCGc-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104548 0.68 0.739926
Target:  5'- gCCGcGGCCAgCCGCGCG-CAGAgGUAc -3'
miRNA:   3'- -GGCcUCGGU-GGCGCGCgGUUUgUAUu -5'
6424 3' -56.3 NC_001847.1 + 17626 0.68 0.739926
Target:  5'- cUCGucGUCGCCGCGCGUgGAGCGg-- -3'
miRNA:   3'- -GGCcuCGGUGGCGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33794 0.69 0.720031
Target:  5'- gCGGGGCUGCgCGCGgCGCCcGGCGc-- -3'
miRNA:   3'- gGCCUCGGUG-GCGC-GCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 16652 0.69 0.720031
Target:  5'- gUCGGGGCC-CCGCGCcuaCAGGCGc-- -3'
miRNA:   3'- -GGCCUCGGuGGCGCGcg-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 60935 0.69 0.709964
Target:  5'- aCGcGAGCCACauaGCGCGCgCAGAgGa-- -3'
miRNA:   3'- gGC-CUCGGUGg--CGCGCG-GUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 50085 0.69 0.699828
Target:  5'- cCCGGgcgcGGCCaagGCUGcCGCGCCGGGCGg-- -3'
miRNA:   3'- -GGCC----UCGG---UGGC-GCGCGGUUUGUauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.